View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0989-Insertion-6 (Length: 329)
Name: NF0989-Insertion-6
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0989-Insertion-6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 139 - 329
Target Start/End: Original strand, 37195628 - 37195818
Alignment:
| Q |
139 |
attgacagtggtggctggtacatcaagaatctggatgtcatcagaggtagaagaatatcctgttgatatttgaggttgtgaggttgctcccatttcaaga |
238 |
Q |
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| T |
37195628 |
attgacagtggtggctggtacatcaagaatttggatgtcatcagaggtagaagaatatcctgttgatattttaggttgtgaggttgctcccatttcaaga |
37195727 |
T |
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| Q |
239 |
agtcttctcgagtatctcaagcttcgacggggattcggatttaattgtcttctcgggccttcccaagacccagactgaacatatacacaaa |
329 |
Q |
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| T |
37195728 |
agtcttctcgagtatctcaagcttcgacggggattcggatttaattgccttctcgggccttcccaagactcggactgaacatatacacaaa |
37195818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 37195413 - 37195546
Alignment:
| Q |
8 |
atatacaattagcaattaaaaactccacttatatatagatgcttcctttattagtagaaaattagaagtcatagatgctgatgaatattgggagaaaatt |
107 |
Q |
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| T |
37195413 |
atatacaattagcaattaaaaactccagttatatatagatgatttctttgatagtagaaatgtagaagtaatagatgctgatgaatgttggcagaaaatt |
37195512 |
T |
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| Q |
108 |
gaactaaaaaattaaagatgaaatagatgttatt |
141 |
Q |
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| T |
37195513 |
gaactaaaaaatttaagataaaatagatgttatt |
37195546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 37184281 - 37184412
Alignment:
| Q |
8 |
atatacaattagcaattaaaaactccacttatatatagatgcttcctttattagtagaaaattagaagtcatagatgctgatgaatattgggagaaaatt |
107 |
Q |
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| T |
37184281 |
atatacaattagcaattaaaaactccagttatatatagatgatttctttgatagtagaaatgtagaagtaatagatgctgatgaatgttggcagaaaatt |
37184380 |
T |
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| Q |
108 |
gaactaaaaaattaaagatgaaatagatgttat |
140 |
Q |
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| T |
37184381 |
gaactaaaaaact-aagatgaaatagatgttat |
37184412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 5364670 - 5364613
Alignment:
| Q |
82 |
atgctgatgaatattgggagaaaattgaactaaaaaattaaagatgaaatagatgttat |
140 |
Q |
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| T |
5364670 |
atgctgatgaatgttagtagaaaatagaactaaaaaact-aagatgaaatagatgttat |
5364613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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