View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0989-Insertion-7 (Length: 324)
Name: NF0989-Insertion-7
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0989-Insertion-7 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 64 - 324
Target Start/End: Complemental strand, 28651505 - 28651244
Alignment:
| Q |
64 |
tgcggagtattctaggaaacaatgatacctattccttccatttactcctcttcaacccctaggttttaaaaccatcaaagtatcttccat-taacacaat |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
28651505 |
tgcggagtattctaggaaacaatgatacctattccttccatttagtcctcttcaacccctaggttttgaaaccatcaaagtatcttccatataacgcaat |
28651406 |
T |
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| Q |
163 |
aacctcaaactattatcatggccacaataacaagtcatgctccaatttatgacnnnnnnngtgaactaaaggagtttgatgagtcaaaggttggtgtcca |
262 |
Q |
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| T |
28651405 |
aacctcaaactattatcatggccacaatcacaagtcatgctccaatttatgacaaaaaaagtgaactaaaggagtttgatgagtcaaaggttggtgtcca |
28651306 |
T |
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| Q |
263 |
aggactcgtagaaaatggagtaacaaaagttccacgcatgttctatcacgaacaatctgata |
324 |
Q |
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| T |
28651305 |
aggacttgtagaaaatggagtaacaaaagttccacgcatgttctattgtgaacaatctgata |
28651244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 64 - 308
Target Start/End: Complemental strand, 28642645 - 28642399
Alignment:
| Q |
64 |
tgcggagtattctaggaaacaatgatacctattccttccatttactcctctt-caacccctaggttttaaaaccatcaaagtatcttccat-taacacaa |
161 |
Q |
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| T |
28642645 |
tgcggagtattctaggaaacaatgatacctattccttctatttagtcctctttcaaccccttggttttgaaaccatcaaagtatcttccatataacacaa |
28642546 |
T |
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| Q |
162 |
taacctcaaactattatcatggccacaataacaagtcatgctccaatttatgacnnnnnnngtgaactaaaggagtttgatgagtcaaaggttggtgtcc |
261 |
Q |
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| T |
28642545 |
taacctcaaactattatcatggccacaatcacaagtcatgctccaatttatgacaaaaagagtgaactaaaggagtttgatgagtcaaaggttggtgtcc |
28642446 |
T |
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| Q |
262 |
aaggactcgtagaaaatggagtaacaaaagttccacgcatgttctat |
308 |
Q |
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| T |
28642445 |
aaggacttgtagaaaatggagtaacaaaagttccacacatgttctat |
28642399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 28642815 - 28642719
Alignment:
| Q |
64 |
tgcggagtattctaggaaacaat--gatacctattccttccatttactcctcttcaacccctaggttttaaaaccatcaaagtatcttccattaaca |
158 |
Q |
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| T |
28642815 |
tgcggagtattctaggaaacaatatgatacctcttccttccatttactcctctttaacccctaggttttgaaaccatcaaagtatcttccattaaca |
28642719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 28671067 - 28670982
Alignment:
| Q |
223 |
gtgaactaaaggagtttgatgagtcaaaggttggtgtccaaggactcgtagaaaatggagtaacaaaagttccacgcatgttctat |
308 |
Q |
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| T |
28671067 |
gtgaactaaagaaatttgatgagtcaaaggttggtgtccaaggacttacagaaaatggagtaacaaaagttccacgcatgttctat |
28670982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 28651607 - 28651549
Alignment:
| Q |
8 |
tttatgatatcttactgtagccaataaggtcaaacaagaaatgcttcttatctagttgc |
66 |
Q |
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| T |
28651607 |
tttatgatatcttactgtagccaataaggtcaaacaagaaatgcttcttatctagttgc |
28651549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 28675211 - 28675129
Alignment:
| Q |
223 |
gtgaactaaaggagtttgatgagtcaaaggttggtgtccaaggactcgtagaaaatggagtaacaaaagttccacgcatgttc |
305 |
Q |
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| T |
28675211 |
gtgaactaaaaaactttgatgagtcaaaggttggtgtccaaggacttgtagaaaatggtgtcacaaaagttccacgtatgttc |
28675129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 28642912 - 28642860
Alignment:
| Q |
14 |
atatcttactgtagccaataaggtcaaacaagaaatgcttcttatctagttgc |
66 |
Q |
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| T |
28642912 |
atatcttaatgtggccaataaggtcaaacaagcaatgcttcttatctagttgc |
28642860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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