View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0989_low_1 (Length: 925)
Name: NF0989_low_1
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0989_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 765; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 1 - 836
Target Start/End: Original strand, 48542654 - 48543477
Alignment:
| Q |
1 |
ccccatggtcatcccttaaatgggcaacaaggtatggaatatttccaacaacagaacagtctgatccagcataagggcaattgtatggtctaaaggtaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542654 |
ccccatggtcatcccttaaatgggcaacaaggtatggaatatttccaacaacagaacagtctgatccagcataagggcaattgtatggtctaaaggtaca |
48542753 |
T |
|
| Q |
101 |
gatagactcatgtttgagtttgctaaaatatggaaatatctctgaacaaccaagagatatgtatctacaaggaaattcaagtgattctgctattttctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542754 |
gatagactcatgtttgagtttgctaaaatatggaaatatctctgaacaaccaagagatatgtatctacaaggaaattcaagtgattctgctattttctcc |
48542853 |
T |
|
| Q |
201 |
aatgctaaacaccttatatcacctagctcttgcctgcaagttggacatctgttgtgtacccttgtcttacaatttgaacaaagggtatgtccattgtgac |
300 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542854 |
aatgctaaacaccttatatcgcctagctcttgcctgcaagttggacatctgttgtgtacccttgtcttacaatttgaacaaagggtatgtccattgtgac |
48542953 |
T |
|
| Q |
301 |
actgcaaaacaaatttgatttaatttttaagaattagtcatcatgttgtagacatgataaatcaaatttttctagttttactgtatttcttgtacaagga |
400 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48542954 |
actgcaaaacaaatttgattt-----ttaagaattagtcatcatgttgtagacatgattaatcaaatttttctagttt-actgtatttcttgtacaagga |
48543047 |
T |
|
| Q |
401 |
caagaatgtcctttggtttaatggaacatttgtattctattatgatctccttggtttcaattgtgattaacttgttatatagaactaaaatataccactt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48543048 |
caagaatgtcctttggtttaatggaacatttgtattctattatgatctccttggtttcaattgtgattaacttgttatatagaactaaaatataccactt |
48543147 |
T |
|
| Q |
501 |
tttaaatctctcaagtggtataggttgtgaagctgaagaaggaggtttgatccctaccattaacaaattatctctacttttgagggctgcaacaaactaa |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48543148 |
tttaaatctctcaagtggtataggttgtgaagctgaagaaggaggtttgatccctaccattaacaaattatctctacttttgagggctgcaacaaactaa |
48543247 |
T |
|
| Q |
601 |
actaatcaactaacatttgccaagaaaaagagaaacgaaaaccgtaaaaagatagcagtaattatctaaacatagacttgcaacatacatggatgatatt |
700 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48543248 |
tc------actaacatttgccaagaaaaagagaaacgaaaaccgtaaaaagatagcagtaattatctaaacatagacttgcaacatacatggatgatatt |
48543341 |
T |
|
| Q |
701 |
cagataacaaacctgatggattggagggtacattgaattggtgcaaaccggacattcaagaagatcatggacaccggtagtggtgggagaattgttgagt |
800 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
48543342 |
cagataacaaacctgatggattggagggtacattgaattggtgcaaaccggacattcaagaagatcatggacactggtagtggtgggagcattgttgagt |
48543441 |
T |
|
| Q |
801 |
agctttgagattgaagaaaactgatggtgatgatgt |
836 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
48543442 |
agctttgagattgaagaaaactgatggtgatgatgt |
48543477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 6 - 309
Target Start/End: Complemental strand, 9836551 - 9836248
Alignment:
| Q |
6 |
tggtcatcccttaaatgggcaacaaggtatggaatatttccaacaacagaacagtctgatccagcataagggcaattgtatggtctaaaggtacagatag |
105 |
Q |
| |
|
||||| ||||||||||| |||||||| | || ||||| || |||||||||||||||||||| ||||||||||| || || ||||| ||| |||| |||| |
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| T |
9836551 |
tggtcgtcccttaaatgagcaacaagctgtgaaatatcaccgacaacagaacagtctgatccggcataagggcagttataaggtctgaagttacaaatag |
9836452 |
T |
|
| Q |
106 |
actcatgtttgagtttgctaaaatatggaaatatctctgaacaaccaagagatatgtatctacaaggaaattcaagtgattctgctattttctccaatgc |
205 |
Q |
| |
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|||| |||||||||||||| |||| ||||||||||||| ||| |||| ||| ||||||| ||||||| ||||||||||||||||||||| |||||||| |
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| T |
9836451 |
actcgtgtttgagtttgctgtaatagggaaatatctctggacagccaacagaggtgtatctgcaaggaagttcaagtgattctgctattttttccaatgc |
9836352 |
T |
|
| Q |
206 |
taaacaccttatatcacctagctcttgcctgcaagttggacatctgttgtgtacccttgtcttacaatttgaacaaagggtatgtccattgtgacactgc |
305 |
Q |
| |
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|||||||| ||||| || || || || ||||||||||| || |||||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||| |
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| T |
9836351 |
taaacaccgaatatcgcccagttcctgtctgcaagttgggcacctgttgtgtaccctagtcttacaagttgaacatagggtatgcccattgtgacactgc |
9836252 |
T |
|
| Q |
306 |
aaaa |
309 |
Q |
| |
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|||| |
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|
| T |
9836251 |
aaaa |
9836248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 708 - 774
Target Start/End: Complemental strand, 9834231 - 9834165
Alignment:
| Q |
708 |
caaacctgatggattggagggtacattgaattggtgcaaaccggacattcaagaagatcatggacac |
774 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| ||||| |||| |
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|
| T |
9834231 |
caaacctgatgaattggagggtacattgaattagtacaaacaggacattcaagaagctcatgaacac |
9834165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 757
Target Start/End: Complemental strand, 733108 - 733059
Alignment:
| Q |
708 |
caaacctgatggattggagggtacattgaattggtgcaaaccggacattc |
757 |
Q |
| |
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||||||||||| |||||||| |||||||||||||| ||||| |||||||| |
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| T |
733108 |
caaacctgatgaattggaggatacattgaattggtacaaacaggacattc |
733059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 736777 - 736518
Alignment:
| Q |
12 |
tcccttaaatgggcaacaaggtatggaatatttccaacaacagaacagtctgatccagcataagggcaattgtatggtctaaaggtacagatagactcat |
111 |
Q |
| |
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||||| ||||| ||||||||| | ||||| |||||| |||| || ||||||||||||||||| ||| ||||||||||||| | || || | ||||| |
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| T |
736777 |
tccctcaaatgtgcaacaaggaaattaatatcgccaacagcagagcactctgatccagcataaggacaagtgtatggtctaaaattgcatattgtctcat |
736678 |
T |
|
| Q |
112 |
gtttgagtttgctaaaatatggaaatatctctgaacaaccaagagatatgtatctacaaggaaattcaagtgattctgctattttctccaatgctaaaca |
211 |
Q |
| |
|
| || || ||||| | |||||||| || |||| ||| |||||||| |||| | || || || || |||||||| || | || |||| ||| | ||| |
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| T |
736677 |
gcttcagcttgctgtagtatggaaagatttctggacatccaagagagtagtatttgcatggtaactcgagtgattcagcaaccttttccagtgccagaca |
736578 |
T |
|
| Q |
212 |
ccttatatcacctagctcttgcctgcaagttggacatctgttgtgtacccttgtcttaca |
271 |
Q |
| |
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||| ||||| || |||||||| || || || ||||||| ||||| |||||||| ||||| |
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| T |
736577 |
cctaatatctccaagctcttgtctacaggtcggacatcgattgtgcacccttgttttaca |
736518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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