View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0989_low_3 (Length: 387)

Name: NF0989_low_3
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0989_low_3
NF0989_low_3
[»] chr4 (3 HSPs)
chr4 (75-212)||(2464463-2464601)
chr4 (69-196)||(6736510-6736629)
chr4 (8-51)||(2464618-2464660)
[»] chr2 (3 HSPs)
chr2 (11-177)||(28173413-28173573)
chr2 (69-211)||(11951637-11951782)
chr2 (69-212)||(2743968-2744109)
[»] scaffold0312 (1 HSPs)
scaffold0312 (69-211)||(18990-19133)
[»] chr1 (1 HSPs)
chr1 (69-211)||(411437-411580)
[»] chr3 (2 HSPs)
chr3 (75-208)||(45227735-45227870)
chr3 (71-212)||(29896665-29896808)
[»] chr7 (1 HSPs)
chr7 (127-212)||(26300141-26300227)
[»] chr6 (1 HSPs)
chr6 (69-212)||(29935083-29935224)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 2464601 - 2464463
Alignment:
Q  75 caaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaacaatttt 173  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  2464601 caaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtggacataatggatgagtgaagttttcaccggtctttatccaaaccatttt 2464502  T
Q  174 taaactaaaaatttcatcctttgtaaactcattcatgct 212  Q
    | ||||||||||||||||||||| |||||||||||||||    
T  2464501 ttaactaaaaatttcatcctttgaaaactcattcatgct 2464463  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 6736510 - 6736629
Alignment:
Q  69 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 167  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||||   |||||         ||||||||| ||||||    
T  6736510 tgaaaccaaagaaatggtgagtcacaagaattcaacgggagcatgacaaacaaagtagaaataatgggtaagtga---------cggtctttacccaaac 6736600  T
Q  168 aatttttaaactaaaaatttcatcctttg 196  Q
    |||||||||||||||| ||||||||||||    
T  6736601 aatttttaaactaaaagtttcatcctttg 6736629  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 2464660 - 2464618
Alignment:
Q  8 aagaagaaaactccaagagatttaatcctttgcaaactgtgaat 51  Q
    |||| ||||||||||||||||| |||||||||||||||||||||    
T  2464660 aagatgaaaactccaagagatt-aatcctttgcaaactgtgaat 2464618  T

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Target: chr2 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 28173573 - 28173413
Alignment:
Q  11 aagaaaactccaagagatttaatcctttgcaaactgtgaatctnnnnnnnnnnnnnnntgaaatcaaagaaatggtgagtcacaagaattcaatgggatc 110  Q
    ||||||||||||||||||||||||||||||||||| ||| |||               ||||||||||||||||||||||||||||||||||||||| ||    
T  28173573 aagaaaactccaagagatttaatcctttgcaaactctgactct-------aaaaaaaatgaaatcaaagaaatggtgagtcacaagaattcaatggggtc 28173481  T
Q  111 ataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaacaatttttaaa 177  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  28173480 ataacaaacaaagtggacataatggacaagtgaagttttcaccggtctttatccaaacaatttttaaa 28173413  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 69 - 211
Target Start/End: Complemental strand, 11951782 - 11951637
Alignment:
Q  69 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacat--aatggacgagtgaagttttcaccggtcttta-ccaa 165  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||  ||| ||  | ||||  ||||||||||||||| ||||    
T  11951782 tgaaaccaaagaaatggtgagtcacaataattcaatgggagcatgacaaacaaagtggacatttaatagataaatgaaaatttcaccggtctttatccaa 11951683  T
Q  166 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgc 211  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  11951682 acaatttttaaactaaaaatttcatcctttggaaactcattcatgc 11951637  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 2744109 - 2743968
Alignment:
Q  69 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatgg--acgagtgaagttttcaccggtcttta-ccaa 165  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||  | |||||||  | | || ||||      ||||||||| ||||    
T  2744109 tgaaaccaaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtaaaaataatgggtatgggt-aagt----gacggtctttacccaa 2744015  T
Q  166 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 212  Q
    |||||||||||||||||| ||||||| |||| |||||||||||||||    
T  2744014 acaatttttaaactaaaagtttcatcatttgaaaactcattcatgct 2743968  T

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Target: scaffold0312 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 69 - 211
Target Start/End: Complemental strand, 19133 - 18990
Alignment:
Q  69 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 167  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||   |||||  ||||||||||||||| ||||||    
T  19133 tgaaaccaaagaaatggtgagtcacaataattcaatgagagcatgacaaacaaagtggacataatggataggtgaaaatttcaccggtctttacccaaac 19034  T
Q  168 aatttttaaactaaaaatttcatcctttgtaaactcattcatgc 211  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  19033 aatttttaaactaaaaatttcatcatttggaaactcattcatgc 18990  T

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Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 69 - 211
Target Start/End: Original strand, 411437 - 411580
Alignment:
Q  69 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 167  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||   |||||  ||||||||||||||| ||||||    
T  411437 tgaaaccaaagaaatggtgagtcacaataattcaatgagagcatgacaaacaaagtggacataatggataggtgaaaatttcaccggtctttacccaaac 411536  T
Q  168 aatttttaaactaaaaatttcatcctttgtaaactcattcatgc 211  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  411537 aatttttaaactaaaaatttcatcatttggaaactcattcatgc 411580  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 45227870 - 45227735
Alignment:
Q  75 caaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtgg-acataatggacgagtgaagttttcaccggtcttta-ccaaacaattt 172  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||||   ||||||  ||||||||||||||| |||||||||||    
T  45227870 caaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtggaaaataatgggtaagtgaaaatttcaccggtctttacccaaacaattt 45227771  T
Q  173 ttaaactaaaaatttcatcctttgtaaactcattca 208  Q
    ||||||||| |||||||||||| | || ||||||||    
T  45227770 ttaaactaacaatttcatccttcgaaagctcattca 45227735  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 29896665 - 29896808
Alignment:
Q  71 aaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtctttaccaaacaa- 169  Q
    |||||||||||||| ||| ||||||||||||||||||| ||| |||||| |||||||||||||||| |||||| ||||||||||||||||| | ||| |     
T  29896665 aaatcaaagaaatgatgaatcacaagaattcaatgggagcatgacaaaccaagtggacataatggatgagtgatgttttcaccggtctttatccaaccat 29896764  T
Q  170 --tttttaaactaaaaatttcatcctttgtaaactcattcatgct 212  Q
      ||||||||||||||| ||||||||||  || ||||||||||||    
T  29896765 tttttttaaactaaaaa-ttcatccttttaaagctcattcatgct 29896808  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 26300141 - 26300227
Alignment:
Q  127 acataatggacgagtgaagttttcaccggtcttta-ccaaacaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 212  Q
    |||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26300141 acataatggatgagtgaagttttcatcggtcattatccaaacaatttttaaactaaaaatttcatcctttgaaaactcattcatgct 26300227  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 29935224 - 29935083
Alignment:
Q  69 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatgg--acgagtgaagttttcaccggtcttta-ccaa 165  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||  | |||||||  | | || ||||      ||||||||| ||||    
T  29935224 tgaaaccaaagaaatggtaagtcacaagaattcaatgggagcatgacaaacaaagtaaaaataatgggtatgggt-aagt----gacggtctttacccaa 29935130  T
Q  166 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 212  Q
    |||||||||||||||||| ||||||| |||| || ||||||||||||    
T  29935129 acaatttttaaactaaaagtttcatcatttgaaagctcattcatgct 29935083  T

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