View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0989_low_4 (Length: 288)
Name: NF0989_low_4
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0989_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 30 - 276
Target Start/End: Complemental strand, 23693565 - 23693319
Alignment:
| Q |
30 |
ctcagtttatagttgtcagatccttgtgattaatggtgttttagacttgaagttgaatttgatttcctcttgtagcctagatatagccatgtaaatgaga |
129 |
Q |
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| T |
23693565 |
ctcagtttatagttgtcagatccttgtgattaatggtgttttagacttgaagttgaatttgatttcctcttgtagcctagatatagccatgtaaatgaga |
23693466 |
T |
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| Q |
130 |
ttaacctcgaattttctagagatattgaagacacgcatctcataattattaaaaatatggtaacatatttaagttgaagcaatactggttgctgtcttca |
229 |
Q |
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| T |
23693465 |
ttaacctcgaatttgctagagatgttgaagacacgcatctcataattattaaagatatggtaacatatttaagttgaagcaatactggttgctgtcttca |
23693366 |
T |
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| Q |
230 |
gctgaaaaccttttctgtctactggaatttgaggtgctttaaatatt |
276 |
Q |
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| T |
23693365 |
gctgaaaaccttttctgtctactggaatttgaggtgctttaaatatt |
23693319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 199
Target Start/End: Complemental strand, 23748998 - 23748854
Alignment:
| Q |
52 |
cttgtgattaatggtgttttagacttgaagttgaatttgatttcctcttgtagcctagatatagccatgtaaatgagattaacctcgaattttctagaga |
151 |
Q |
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| T |
23748998 |
cttgtgattaatggtgttttggtctggaatttga--ttgctt-cttcatgtagcctagatatcgccatgtaaaggagattaaccttgaatttgcacgaga |
23748902 |
T |
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| Q |
152 |
tattgaagacacgcatctcataattattaaaaatatggtaacatattt |
199 |
Q |
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| T |
23748901 |
tgttgaagacgcacatctcatacttattaaagataaggtaacatattt |
23748854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 23687435 - 23687352
Alignment:
| Q |
114 |
agccatgtaaatgagattaacctcgaattttctagagatattgaagacacgcatctcataattattaaaaatatggtaacatat |
197 |
Q |
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| T |
23687435 |
agccatgtaaaggagattaacctggaatttgcaagagatgttgaagacacatatctcatacttattaaagataaggtaacatat |
23687352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 23721490 - 23721411
Alignment:
| Q |
118 |
atgtaaatgagattaacctcgaattttctagagatattgaagacacgcatctcataattattaaaaatatggtaacatat |
197 |
Q |
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| T |
23721490 |
atgtaaaggagattaaccttgaatttgcaagaaatgttgaagacacacatctcatacttattaaagataaggtaacatat |
23721411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 23701647 - 23701738
Alignment:
| Q |
97 |
tcttgtagcctagatatagccatgtaaatgagattaacctcgaattttctagagatattgaagacacgcatctcataattattaaaaatatggta |
191 |
Q |
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| T |
23701647 |
tcttttagcctagatatcgtcatgtaaaggagattaaccttgaattttc---agatgttgaagacagacatctcatactaattaaagataaggta |
23701738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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