View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0989_low_5 (Length: 288)
Name: NF0989_low_5
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0989_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 39771094 - 39770831
Alignment:
| Q |
1 |
tctatttgattatgttaaaaaggaaagaataaatgagaggtacatcaattttgcatgaacacatttattgtatccctaacttcgctcaccttttcattgg |
100 |
Q |
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| T |
39771094 |
tctatttgagtatgttaaaaaggaaagaataaatgagaggtacatcaattttgcatgaacacatttattgtatccctaacttcgctcaccttttcattgg |
39770995 |
T |
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| Q |
101 |
attccttgtttcatcacttgatgatatttttctgaacggtaacagttgtgggtcagggagggaccattcaattttaagaaattgtgaggtcctaatctat |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39770994 |
attccttgtttcatcagttgatgatatttttctgaacggtaacagttgtgggtcagggagggaccattcaattttaagaaattgtgaggtcctaatctat |
39770895 |
T |
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| Q |
201 |
aatcatgcagacccctaagacaaggtaatcttgaaatgcttggcctattgcactcttatattat |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39770894 |
aatcatgcagacccctaagacaaggtaatcttgaaatgcttggcctattgcactcttatattat |
39770831 |
T |
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