View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0991_high_1 (Length: 483)

Name: NF0991_high_1
Description: NF0991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0991_high_1
NF0991_high_1
[»] chr8 (3 HSPs)
chr8 (200-355)||(10867436-10867591)
chr8 (8-141)||(10867255-10867388)
chr8 (413-454)||(10867649-10867690)
[»] chr5 (2 HSPs)
chr5 (70-109)||(7464151-7464190)
chr5 (69-109)||(42506205-42506245)
[»] chr7 (1 HSPs)
chr7 (63-109)||(19491936-19491982)
[»] chr6 (1 HSPs)
chr6 (63-109)||(20715814-20715860)
[»] chr2 (1 HSPs)
chr2 (75-129)||(27597310-27597364)
[»] scaffold0063 (1 HSPs)
scaffold0063 (73-109)||(52194-52230)
[»] scaffold0013 (1 HSPs)
scaffold0013 (41-109)||(41569-41637)
[»] chr3 (1 HSPs)
chr3 (77-129)||(41143571-41143623)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 200 - 355
Target Start/End: Original strand, 10867436 - 10867591
Alignment:
Q  200 gttaaaacatcatttcacataaaatatttttataatttttattacttagtgaaaataaaaaagaatatgggtttggattagagttctctgcagtnnnnnn 299  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||          
T  10867436 gttaaaacatcatttcacatacaatatttttataatttttattacttagtgaaaataaaaaagaatatgggtttggactagggttctctgcagtaaaaaa 10867535  T
Q  300 ntattttgcattcacgcattcggttcatactttgtcattagatcaagatcgaacgg 355  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10867536 atattttgcattcacgcattcagttcatactttgtcattagatcaagatcgaacgg 10867591  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 10867255 - 10867388
Alignment:
Q  8 ccaagaatataacaaatataatataannnnnnnaatgactacaacaataaacatgattataggaaaaatttgtttaaggttacaattgagataatgaaaa 107  Q
    |||| ||||||| |||||||||||||       ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10867255 ccaacaatataataaatataatataatttttttaataactacaacaataaacatgattataggaaaaatttgtttaaggttacaattgagataatgaaaa 10867354  T
Q  108 aggcacgccaaaatctcatattgatattctccct 141  Q
    |||||||||||||| |||||||||||||||||||    
T  10867355 aggcacgccaaaatttcatattgatattctccct 10867388  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 454
Target Start/End: Original strand, 10867649 - 10867690
Alignment:
Q  413 ctgatctgttcaatcatgatccaacgacggcagagatgtcgc 454  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  10867649 ctgatttgttcaatcatgatccaacgacggcagaggtgtcgc 10867690  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 7464151 - 7464190
Alignment:
Q  70 gaaaaatttgtttaaggttacaattgagataatgaaaaag 109  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  7464151 gaaaaatttgtttaagggtataattgagataatgaaaaag 7464190  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 42506245 - 42506205
Alignment:
Q  69 ggaaaaatttgtttaaggttacaattgagataatgaaaaag 109  Q
    ||||||| |||||||||| || |||||||||||||||||||    
T  42506245 ggaaaaagttgtttaagggtataattgagataatgaaaaag 42506205  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 19491982 - 19491936
Alignment:
Q  63 attataggaaaaatttgtttaaggttacaattgagataatgaaaaag 109  Q
    ||||||||||||| |||||||| | || |||||||||||||||||||    
T  19491982 attataggaaaaaattgtttaaaggtataattgagataatgaaaaag 19491936  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 20715860 - 20715814
Alignment:
Q  63 attataggaaaaatttgtttaaggttacaattgagataatgaaaaag 109  Q
    ||||||| ||||| |||||||||| || |||||||||||||||||||    
T  20715860 attatagaaaaaaattgtttaagggtataattgagataatgaaaaag 20715814  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 27597364 - 27597310
Alignment:
Q  75 atttgtttaaggttacaattgagataatgaaaaaggcacgccaaaatctcatatt 129  Q
    |||||||||||| || |||||| |||||||||||| ||  |||||||||||||||    
T  27597364 atttgtttaaggctataattgaaataatgaaaaagtcagtccaaaatctcatatt 27597310  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 52230 - 52194
Alignment:
Q  73 aaatttgtttaaggttacaattgagataatgaaaaag 109  Q
    |||||||||||||| || |||||||||||||||||||    
T  52230 aaatttgtttaagggtataattgagataatgaaaaag 52194  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 41569 - 41637
Alignment:
Q  41 aatgactacaacaataaacatgattataggaaaaatttgtttaaggttacaattgagataatgaaaaag 109  Q
    |||||| ||||||| || | | ||||||| ||||| |||||||||| || ||||| |||||||||||||    
T  41569 aatgacaacaacaacaatctttattatagaaaaaagttgtttaagggtataattgggataatgaaaaag 41637  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 41143571 - 41143623
Alignment:
Q  77 ttgtttaaggttacaattgagataatgaaaaaggcacgccaaaatctcatatt 129  Q
    |||||||||| || |||| |||||| ||||||||||  |||||||||||||||    
T  41143571 ttgtttaagggtataattaagataaagaaaaaggcagcccaaaatctcatatt 41143623  T

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