View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0991_high_2 (Length: 425)
Name: NF0991_high_2
Description: NF0991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0991_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 6216679 - 6217019
Alignment:
| Q |
30 |
ggtggcagggtatgttatgagttatgacaaatacttgtctaattagatttttgtggtataaaaatgtttgcctatatgtgataatattctcattctttta |
129 |
Q |
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| T |
6216679 |
ggtggcagggtatgttatgagttatgacaaatacttgtctaattagatttttgtggtataaaaatgtttgcctatatgtgataatattctcattctttta |
6216778 |
T |
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| Q |
130 |
ctatcttgttatcttttgattcacaggaagtctctattattgaaatcatccttgtcaactctaggcatatgcttcatcaggtatatatcatattatgaaa |
229 |
Q |
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| T |
6216779 |
ctatcttgttatcttttgattcacaggaagtctctattattgaaatcatccttgtcaactctaggcatatgcttcatcaggtatatatcatattatgaaa |
6216878 |
T |
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| Q |
230 |
cctatatccaagtgacacatatatttcatgcataattattttaagagtgcaattatagtcacataattttctcttttttaatctctaaatttaacatagt |
329 |
Q |
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| T |
6216879 |
cctatatccaagtgacacatatatttcatgcataattattttaagagtgcaattatagtcacataattttctcttttttaatctctaaatttaacatagt |
6216978 |
T |
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| Q |
330 |
ttgaaaagtaaaatgtcttcgcatgatgtatcatactaagc |
370 |
Q |
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| T |
6216979 |
ttgaaaagtaaaatgtcttcgcatgatgtatcatactaagc |
6217019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 416
Target Start/End: Original strand, 6217032 - 6217061
Alignment:
| Q |
387 |
gagattttatcttttataattaagtataat |
416 |
Q |
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| T |
6217032 |
gagattttatcttttataattaagtataat |
6217061 |
T |
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