View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0991_low_1 (Length: 965)
Name: NF0991_low_1
Description: NF0991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0991_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 666; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 1 - 851
Target Start/End: Complemental strand, 55696827 - 55695975
Alignment:
| Q |
1 |
ttcgtggtttgggttcccgtctccacatttacaagtcccatgaatctggggatcgttttccttcatctcatacatgcttttgtcggctgtgtttcccagc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55696827 |
ttcgtggtttgggttcccgtctccacatttacaagtcccatgaatccggtgatcgtcttccttcatctcatacatgcttttatcggctgtgtttcccagc |
55696728 |
T |
|
| Q |
101 |
ttattcatctatgcctgtcatgcaagctcgacttaaagtcattacccaagaacatattggctctagttttggtacttggtgaacatacctgcaatctgga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696727 |
ttattcatctatgcctgtcatgcaagctcgtcttaaagtcattacccaagaacatattggctctagttttggtacttggtgaacatacctgcaatctgga |
55696628 |
T |
|
| Q |
201 |
aagaaactggttttgatttgactgcacatagaattattgttctgcagctttgtacagactataggagcatcccatctgttgtcctctagttggatacttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696627 |
aagaaactggttttgatttgactgcacatagaattatcgttctgcagctttgtacagactataggagcatcccatctgttgtcctctagttggatacttt |
55696528 |
T |
|
| Q |
301 |
gagaaagttgtcaaagttctgttttggaaagtagtcaagggatgtaattttattgatcttggtcaaatgtttatatggataaaatattaataatacatga |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
55696527 |
gagaaagttatcaaagttctgttttggaaagtagtcaagggatgtaattttattgatcttggtcaaatgtttatatggataaaatattaataatacagga |
55696428 |
T |
|
| Q |
401 |
tttgaaggannnnnnnnnnatatctacattctagttaatagctgctggttcgtcatcgggagtgtggcacaacaattaagtttgtgaagtgctagcagcg |
500 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
55696427 |
tttgaagga-tttttttttatatctacattcaagttaatagctgctggttcgtcatcgggagtgtggcacaaccattaagtttgtgaagtgctagcagcg |
55696329 |
T |
|
| Q |
501 |
cattctcgaacactttctgaaatgtgttatgtatacgtttggtttggcgatagcatcggttttcttgcgttccaaggtaaatgcattgtgcaaattggga |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
55696328 |
cattctcgaacactttctgaaatgtgttatgtatacgtttggtttggcgatagcatcagttttcttgcattccaaggtaaatgcattgttcaaattggga |
55696229 |
T |
|
| Q |
601 |
aactacgtggtgtagcagcaaccaaacattggatcaagattctctctattg--nnnnnnnntttgaggcaataatgtagagatcttaatcagtgatcttg |
698 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| |
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|
| T |
55696228 |
aactacgtggtgtagcagcaaccaaacacgggatcaagattctctctattgaaaaaaaaaacttgaggaaataatgtagagatcttaatcactgatcttg |
55696129 |
T |
|
| Q |
699 |
accattgataatatggagatcaatggttaagatcacctcattatttcctcaagnnnnnnnnncccaattgagagaatccatttccctagtttctatggg- |
797 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
55696128 |
accattgataatatggagatcaatggttaagatctcctcattatttcctcaag-ttttttttcccaattgagagaatccatttccctagtttctatggga |
55696030 |
T |
|
| Q |
798 |
-atccctatgaatttcaaatttcagtcagtaaatagtgttttagagattgtgatg |
851 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55696029 |
tatccctatgaatttcaaatttcagtcagtaaatagtgttttagagattgtgatg |
55695975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 733
Target Start/End: Original strand, 7898163 - 7898204
Alignment:
| Q |
692 |
gatcttgaccattgataatatggagatcaatggttaagatca |
733 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
7898163 |
gatcttgaccattgataatgtggagatcaatggtcaagatca |
7898204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 700 - 732
Target Start/End: Original strand, 26919500 - 26919532
Alignment:
| Q |
700 |
ccattgataatatggagatcaatggttaagatc |
732 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
26919500 |
ccattgataatatggagatcaatggttaagatc |
26919532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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