View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0991_low_15 (Length: 263)
Name: NF0991_low_15
Description: NF0991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0991_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 25218477 - 25218717
Alignment:
| Q |
1 |
ataggagatgggaatgactctcacttctagcttcaaagatgggtaggtgattttagtcttaaagataaatttcctagacttttctctatctgtgtttcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25218477 |
ataggagatgggaatgactctcacttctagcttcaaagatgggtaggtgattttagtattaaagataaatttcctagacttttctctatctgtgtttcaa |
25218576 |
T |
|
| Q |
101 |
cagaaaattgcaactttggatgccctaaaggtgagaggaattatcgattataacattggcattccttgtgttttctgcttaaattatgatgaaagttgcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25218577 |
cagaaaattgcaactttggatgccctaaaggtgagaggaattatcgattataacattggcattccttgtgttttctgcttaaattatgatgaaagttgca |
25218676 |
T |
|
| Q |
201 |
accatctctttatctcatctccgtttgctaattctgatgat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25218677 |
accatctctttatctcatctccgtttgctaattctgatgat |
25218717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 25282632 - 25282872
Alignment:
| Q |
1 |
ataggagatgggaatgactctcacttctagcttcaaagatgggtaggtgattttagtcttaaagataaatttcctagacttttctctatctgtgtttcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25282632 |
ataggagatgggaatgactctcacttctagcttcaaagatgggtaggtgattttagtattaaagataaatttcctagacttttctctatctgtgtttcaa |
25282731 |
T |
|
| Q |
101 |
cagaaaattgcaactttggatgccctaaaggtgagaggaattatcgattataacattggcattccttgtgttttctgcttaaattatgatgaaagttgcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25282732 |
cagaaaattgcaactttggatgccctaaaggtgagaggaattatcgattataacattggcattccttgtgttttctgcttaaattatgatgaaagttgca |
25282831 |
T |
|
| Q |
201 |
accatctctttatctcatctccgtttgctaattctgatgat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25282832 |
accatctctttatctcatctccgtttgctaattctgatgat |
25282872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University