View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0991_low_2 (Length: 926)
Name: NF0991_low_2
Description: NF0991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0991_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 184 - 828
Target Start/End: Complemental strand, 48542300 - 48541659
Alignment:
| Q |
184 |
ttttgatatcttatccgaattgttatgactaactcttattgtttggttcatgtaggttttccattgttttggtcaatatttttgtctccattttgaagca |
283 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542300 |
ttttgatatcttatccaaattgttatgactaactcttattgtttggttcatgtaggttttccattgttttggtcaatatttttgtctccattttgaagca |
48542201 |
T |
|
| Q |
284 |
ttccagcttgaaacgtcacctgtttacatggcatttcttcgattcatgggtgatgatagagacgccaagaactacagctacagcttagaagtgggaggaa |
383 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542200 |
ttccagcttgaaacgtcacctgtttacatggcgtttcttcgattcatgggtgatgacagagacgccaagaactacagctacagcttagaagtgggaggaa |
48542101 |
T |
|
| Q |
384 |
atggacgtaaactaacatttgaagggagtccaagaagcattagagatagtcacaagaaagtgaaggatagtcatgacggcctaatcatataccgtaacat |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542100 |
atggacgtaaactaacatttgaagggagtccaagaagcattagagatagtcacaagaaagtgaaggatagtcatgacggcctaatcatataccgtaacat |
48542001 |
T |
|
| Q |
484 |
ggcacttttcttctcaggtggggatagaaaagagttgaaactaagagtaacaggaaggatatggaaagagcagcaaaactctgaatgcacacccaacatg |
583 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542000 |
ggcacttttcttctcaggtggggatagaaaagagttgaaactaagagtaacaggaaggatatggaaagagcagcaaaactctgaatgcacacccaacatg |
48541901 |
T |
|
| Q |
584 |
tgtagctaggttgtgctatttcttattgtagattactagattttggaaagtcttatctagttatcttggtgtatgttttgttaatggttatggaggtttc |
683 |
Q |
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| T |
48541900 |
tgtagctaggttgtgctatttcttattgtagattactagattttggaaagtcttatctagttatcttggtgtatgttttgttaatggttatggaggtttc |
48541801 |
T |
|
| Q |
684 |
aatttacaaaacacactacttcccttctcatgccacttttcatttcttgttcataacaagtaatacaagcaagaatctttacttctacagctacttgcat |
783 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48541800 |
aatttacaaaacac---acttcccttctcatgccacttttcatttcgtgttcataacaagtaatacaagcaagaatctttacttctacagctactttgat |
48541704 |
T |
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| Q |
784 |
cttcctaggatctttttagctatttgtaagaaatggaaacatgct |
828 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48541703 |
cttcctaggatctttttagctatttgtaagaaatggaaacatgct |
48541659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 48542678 - 48542488
Alignment:
| Q |
1 |
gcccatttaagggatgaccatggggttgatatgcattctggatgcacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542678 |
gcccatttaagggatgaccatggggttgatatgcattctggatgcacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctactt |
48542579 |
T |
|
| Q |
101 |
ggatgctaacggtaattatgactcttaacaaaatttgctatttattgatcggtttagttatttagcaactgatgaattcagatttttgata |
191 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542578 |
ggatgctaacggtaattatgacccttaacaaaatttgctatttattgatcggtttagttatttagcaactgatgaattcagatttttgata |
48542488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 4e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 236 - 568
Target Start/End: Original strand, 9837124 - 9837456
Alignment:
| Q |
236 |
taggttttccattgttttggtcaatatttttgtctccattttgaagcattccagcttgaaacgtcacctgtttacatggcatttcttcgattcatgggtg |
335 |
Q |
| |
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||||| ||||| |||||||| |||||||| ||||||||||||||||| || || |||| || | | || ||||||||||||||||| || |||||||| | |
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| T |
9837124 |
taggtcttccactgttttggacaatatttctgtctccattttgaagcctttcaacttggaatggctccagtttacatggcatttctccgtttcatgggag |
9837223 |
T |
|
| Q |
336 |
atgatagagacgccaagaactacagctacagcttagaagtgggaggaaatggacgtaaactaacatttgaagggagtccaagaagcattagagatagtca |
435 |
Q |
| |
|
|||| ||||| |||| || |||||||||||| | || || ||||| | ||||| ||||||| | || || |||||||| ||||||||||| || || |
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| T |
9837224 |
atgaaagagatgccaggagctacagctacagtcttgaggtaggagggagcggacgcaaactaatctacgagggcagtccaaggagcattagagacagcca |
9837323 |
T |
|
| Q |
436 |
caagaaagtgaaggatagtcatgacggcctaatcatataccgtaacatggcacttttcttctcaggtggggatagaaaagagttgaaactaagagtaaca |
535 |
Q |
| |
|
||||||||| | || |||||||| ||||| || |||||||| |||||||||||||||||||| ||||| ||||| |||||| |||| || |||||||| |
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| T |
9837324 |
caagaaagttagagacagtcatgatggcctcattatataccggaacatggcacttttcttctctggtggagataggaaagagctgaagttacgagtaaca |
9837423 |
T |
|
| Q |
536 |
ggaaggatatggaaagagcagcaaaactctgaa |
568 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| |
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| T |
9837424 |
ggaaggatatggaaagaacagcaaaaccctgaa |
9837456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 9836535 - 9836646
Alignment:
| Q |
4 |
catttaagggatgaccatggggttgatatgcattctggatgcacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctacttgga |
103 |
Q |
| |
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||||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||||||||||| |||| |
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| T |
9836535 |
catttaagggacgaccacagagttgatatgcattctggatgcacttttaatcatcgttatgtcaagtcaaatcccatggaagtagaaaatgctacatgga |
9836634 |
T |
|
| Q |
104 |
tgctaacggtaa |
115 |
Q |
| |
|
|| |||| |||| |
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| T |
9836635 |
tgttaacagtaa |
9836646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 14232530 - 14232600
Alignment:
| Q |
44 |
gcacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctacttggatgctaacggta |
114 |
Q |
| |
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| T |
14232530 |
gcacttttaaccatcgttatgtcaaatcaaatcctcaagatgttgaaaatgcaacatggatgttaacggta |
14232600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 5037448 - 5037359
Alignment:
| Q |
25 |
gttgatatgcattctggatgcacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctacttggatgctaacggta |
114 |
Q |
| |
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||||| |||||| ||| ||||||||||| |||||||| ||||||||||||||| ||||| |||||||| || |||||| |||||||| |
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| T |
5037448 |
gttgacatgcatagtggctgcacttttaatcatcgttacgtcaaatcaaatcctcaagaagttgaaaatgccacatggatgttaacggta |
5037359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 549
Target Start/End: Complemental strand, 41632858 - 41632791
Alignment:
| Q |
482 |
atggcacttttcttctcaggtggggatagaaaagagttgaaactaagagtaacaggaaggatatggaa |
549 |
Q |
| |
|
|||||||| || ||||| ||||||||||| || ||||||||||| ||||| || ||||| |||||||| |
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|
| T |
41632858 |
atggcactatttttctctggtggggataggaaggagttgaaacttagagtcaccggaagaatatggaa |
41632791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 235 - 333
Target Start/End: Complemental strand, 41633105 - 41633007
Alignment:
| Q |
235 |
gtaggttttccattgttttggtcaatatttttgtctccattttgaagcattccagcttgaaacgtcacctgtttacatggcatttcttcgattcatggg |
333 |
Q |
| |
|
|||||| || ||||||||||| |||||||| || || ||||| ||||| || ||||||| | | | ||||||||||||||||| ||||| || ||||| |
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| T |
41633105 |
gtaggtatttcattgttttggccaatatttctgccttcatttcgaagcttttcagcttggcatggcccctgtttacatggcattccttcggtttatggg |
41633007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 23403557 - 23403633
Alignment:
| Q |
39 |
tggatgcacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctacttggatgctaacggtaa |
115 |
Q |
| |
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||||| ||| ||||||||||| ||||||||||||||||| ||||| |||||||| || ||||||||||| |||| |
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| T |
23403557 |
tggattcacctttaaccatcgatatgtcaaatcaaatccacatgaagttgaaaatgccacatggatgctaaccgtaa |
23403633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 736803 - 736870
Alignment:
| Q |
40 |
ggatgcacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctacttggatgct |
107 |
Q |
| |
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|||||||| || |||||||||||||| || |||||||| |||||||| ||||||||||||||||| |
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| T |
736803 |
ggatgcacattcaaccatcgttatgtgaagtcaaatccgcgtgaagtagagaatgctacttggatgct |
736870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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