View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0991_low_4 (Length: 500)
Name: NF0991_low_4
Description: NF0991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0991_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 95 - 466
Target Start/End: Complemental strand, 37608870 - 37608502
Alignment:
| Q |
95 |
cccaactcactcctcttcttcttccttgcagttacattacacttggtgtcacttgtgacagtgtaaactctaatctcagaagaagaattaatcatctaaa |
194 |
Q |
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| T |
37608870 |
cccaactcactcctcttcttcttccttgcagttacattacacttggtgtcacttgtgacagtgtaaactctaatctcagaagaa---ttaatcatcaaaa |
37608774 |
T |
|
| Q |
195 |
agaaaatgactctattttcatctctgcaaatcaccaccacctccaccgcaacggtctcttttcttcatcaatcctcctcctcctcctttcactctcacaa |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37608773 |
agaaaatgactctattttcatctctgcaaatcaccaccaccaccaccgcaacggtctcttttcttcatcaatcctcctcctcctcctttcactctcacaa |
37608674 |
T |
|
| Q |
295 |
tccctcttcaactatcttccacaaatcccttcttcctggttttgctacttcaccctccttttcattcnnnnnnnccagaaaactcgctactacccgtgct |
394 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37608673 |
tccctcttcaactatcttctacaaatcccttcttcctggttttgctacttcaccctccttttcattcaaaaaaaccagaaaactcgctactacccgtgct |
37608574 |
T |
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| Q |
395 |
tctttgcttgaaactccagttctatgggttggtaggatctgcatctactacgcccttgtcaaaactggcttc |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37608573 |
tctttgcttgaaactccagttctatgggttggtaggatctgcatctactacgcccttgtcaaaactggcttc |
37608502 |
T |
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