View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0991_low_7 (Length: 431)
Name: NF0991_low_7
Description: NF0991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0991_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 87 - 428
Target Start/End: Complemental strand, 33532397 - 33532056
Alignment:
| Q |
87 |
tcatcatctgttcattcactacctatcaagacagttaacaatacacaacaaaaagaatcaaaagggtcgccaaatcatgagtcaaaagttccaactgaga |
186 |
Q |
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| T |
33532397 |
tcatcatctgttcattcactacctatcaagacagttaacaatacacaacaaaaagaatcaaaagggtcgccaaatcatgagtcaaaagttccaactgaga |
33532298 |
T |
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| Q |
187 |
ctcaagcaagaaaaagcatcactttttctcacacacctacagattctgcaagaagctcaattcaacagaaagagcctaatggtaattccttaggacttgc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33532297 |
ctcaagcaagaaaaagcatcactttttctcacacacctacagattctgcaagaagctcaattcaacagaaagagcctaatggtaattccttaggacttgc |
33532198 |
T |
|
| Q |
287 |
aagaataagtactagtagtactactactactattcgtccgcgagacagtgaaaccaagtcccctagcaaagatttgagcacaccaaaactcactgggaat |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33532197 |
aagaataagtactagtagtactactactactattcgtccgcgagacagtgaaaccaagtcccctagcaaagatttgagcacaccaaaactcactgggaat |
33532098 |
T |
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| Q |
387 |
ttgcttatgaatagtagctatagcagcccaagaacaagtgtt |
428 |
Q |
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| T |
33532097 |
ttgcttatgaatagtagctatagcagcccaagaacaagtgtt |
33532056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 14428009 - 14428128
Alignment:
| Q |
100 |
attcactacctatcaagacagttaacaatacacaacaaaaagaatcaaaagggtcgccaaatcatgagtcaaaagttccaactgagactcaagcaagaaa |
199 |
Q |
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|||||||||| ||||| ||| |||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
14428009 |
attcactacccatcaaaacaattaacaatccacaacaaaaagatcccaaagggtcaccaaatcatgagtcaaaagttccaacagagcctcaagcaagaaa |
14428108 |
T |
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| Q |
200 |
aagcatcactttttctcaca |
219 |
Q |
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| T |
14428109 |
aagcactactttttctcaca |
14428128 |
T |
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