View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0992_low_1 (Length: 429)
Name: NF0992_low_1
Description: NF0992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0992_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 155 - 397
Target Start/End: Original strand, 20301522 - 20301762
Alignment:
| Q |
155 |
gatgttggtgtttctgcctccatctttatttcttttgactgtttttcatacggtgtataacaatctctttggtactctatttgcaggatatgcctctcat |
254 |
Q |
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| T |
20301522 |
gatgttggtgtttctgcctccatctttatttcttttgactgtgtttcatacagtgtataacaatctctt-ggtactctctttgcaggatatgcctctcat |
20301620 |
T |
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| Q |
255 |
gtctcttgactatggtttccttgttatgtgagtttctcttttgtctttaataggtaagtttagattatttgattttcttacttatcagtgaagtaacatg |
354 |
Q |
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| T |
20301621 |
gtctcttgactatggtttccttgttatgcgagtttctcttttgtctttaataggtaaatttggattatttgattttcttacttatgagtgcagtaacatg |
20301720 |
T |
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| Q |
355 |
ttctgaatatcccnnnnnnnatttgtggtattgaaatctataa |
397 |
Q |
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| T |
20301721 |
ttctgaatatccc-tattttatttgtggtattgaaatctataa |
20301762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 20299167 - 20299262
Alignment:
| Q |
234 |
tttgcaggatatgcctctcatgtctcttgactatggtttccttgttatgtgagtttctcttttgtctttaataggtaagtttagattatttgattt |
329 |
Q |
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| T |
20299167 |
tttgcaggctatgccactcctgttttttcactatggtctcctagttatgttagtttctctttggtctttcgtaggtaagttttgatcattttattt |
20299262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 96 - 276
Target Start/End: Complemental strand, 30481420 - 30481250
Alignment:
| Q |
96 |
gctcactctttggcaggtgatgtttctgctactgatttcaacaggaatcaaaaaacagagatgttggtgtttctgcctccatctttatttcttttgactg |
195 |
Q |
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| T |
30481420 |
gctcactctttggcaggtgatgtttctgctactgatttcaacaggaatcaaaaaacagagatgttggtgtttctgcctccatctttatttcttttgactg |
30481321 |
T |
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| Q |
196 |
tttttcatacggtgtataacaatctctttggtactctatttgcaggatatgcctctcatgtctcttgactatggtttcctt |
276 |
Q |
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| T |
30481320 |
tgtttc---------ataacaatctc-ttggtactctatttgcaggatatgcctctcatgtctcttgactatggtttcctt |
30481250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 171 - 366
Target Start/End: Original strand, 30246320 - 30246518
Alignment:
| Q |
171 |
cctccatctttatttcttttgactgtttttcatacggtgta-taacaatctctttggtactctatttgcaggatatgcctctcatgtctcttgactatgg |
269 |
Q |
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| T |
30246320 |
cctccgtctttatttctattgactgtgtttcttacagggcagtaacaatttctt-ggtagtctctttgtaggatatgcctctcatgtctcttgactttgg |
30246418 |
T |
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| Q |
270 |
tttccttgttatgtgagtttctcttttgtctttaataggtaagtttagattatttgattttctta---cttatcagtgaagtaacatgttctgaatatcc |
366 |
Q |
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| T |
30246419 |
tttccttgttatgcgactttatcttttggctatcataggtaagtttggattatcttatttccttacttcttatcagtgcagtaacatgtcctgaatatcc |
30246518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 30204933 - 30204857
Alignment:
| Q |
226 |
gtactctatttgcaggatatgcctctcatgtctcttgactatggtttccttgttatgtgagtttctcttttgtcttt |
302 |
Q |
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| T |
30204933 |
gtactctctttgcaagatgagccactcttgtctcttcacaatggtctccttgttatgttagtttctgtgttgtcttt |
30204857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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