View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0992_low_3 (Length: 278)
Name: NF0992_low_3
Description: NF0992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0992_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 1231768 - 1232036
Alignment:
| Q |
1 |
tcatcagaaagctgaagagctggttaaatcacctagaaagcaggaatctcaatctgaaaatgagagtgatgaatcagatgttgtggaacatgatgtgagt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1231768 |
tcatgagaaagctgaagagctggttaaatcacctagaaagcaggaatctcaatctgaaaatgagagtgatgaatcagatgttgtggaacatgatgtgagt |
1231867 |
T |
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| Q |
101 |
atctttcctttcctttcctttatgttgatcttcttcggctgaaattaaacttgattgagatgaaaatggaaggagtgtaatgtaatggcatatgtggaga |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1231868 |
atctttcctttcctttcatttatgttgatcttcttcggctgaaattaaacttgattgagatgaaaatggaaggagtgtaatgtaacggcatatgtggaga |
1231967 |
T |
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| Q |
201 |
tgcttaacctcaattcatatttttaactgtggtgattgaaaaataggtgaaggtatgcgacatctgtgg |
269 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1231968 |
tgcttaacctcaattcatatttctaactgtggtgattgaaaaataggtgaaggtatgcgacatctgtgg |
1232036 |
T |
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