View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0993_high_2 (Length: 246)
Name: NF0993_high_2
Description: NF0993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0993_high_2 |
 | |
|
| [»] scaffold0210 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 39563669 - 39563899
Alignment:
| Q |
5 |
gaagagaacaaacaaaaaatttcctgatttttcccctatcacctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgtt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
39563669 |
gaagagaacaaacaaaaaatttcctgatttttcccctatcacctcatcaaaagattcaaatatatcaatgctaggctggtggatagtacaaacaactgtt |
39563768 |
T |
|
| Q |
105 |
cttccagtgtttactgtgttcctaactgttctcatcacaatagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39563769 |
cttccagtgtttactgtgttcctaactgttctcatcacaatagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggat |
39563868 |
T |
|
| Q |
205 |
tagctaccaactcaactgcaattgtcaaccg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
39563869 |
tagctaccaactcaactgcaattgtcaaccg |
39563899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 39339245 - 39339063
Alignment:
| Q |
43 |
tcacctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcac |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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|
| T |
39339245 |
tcacctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcataac |
39339146 |
T |
|
| Q |
143 |
aatagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39339145 |
aatagctgcagcccttgcatctagcccagaagttggctcatccatgaatattattgaaggattagcaaccaactcaactgcaa |
39339063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 40 - 231
Target Start/End: Original strand, 39537608 - 39537799
Alignment:
| Q |
40 |
ctatcacctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39537608 |
ctatcacctcatcaaaagattcaaatatatcaatgctaggttggtgaatggtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcat |
39537707 |
T |
|
| Q |
140 |
cacaatagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtca |
231 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
39537708 |
aacaatagctgcagcccttgcatcaagtccagaagttggctcatccatgaatattatagaaggattagcaaccaactcaactgcaatagtca |
39537799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 39354088 - 39353906
Alignment:
| Q |
43 |
tcacctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcac |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | ||||||||| ||||||||||||||||| |
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|
| T |
39354088 |
tcacctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttcctgtatctactgtgtttctaactgttctcatcac |
39353989 |
T |
|
| Q |
143 |
aatagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaa |
225 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39353988 |
aactgctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagcaaccaactcaactgcaa |
39353906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 41 - 231
Target Start/End: Original strand, 39547074 - 39547264
Alignment:
| Q |
41 |
tatcacctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatc |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
39547074 |
tatcacctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccggtgtctactgtgttcctaactgttctcata |
39547173 |
T |
|
| Q |
141 |
acaatagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtca |
231 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
39547174 |
acaatagctgcagctcttgcatcaagtccagaagttggctcatccatgaatattatagaaggattagcaaccaactcaactgcaatagtca |
39547264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 39366668 - 39366486
Alignment:
| Q |
43 |
tcacctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcac |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
39366668 |
tcacctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaacagttcttccggtgtcaactgtgttcctaactgctctcatcac |
39366569 |
T |
|
| Q |
143 |
aatagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaa |
225 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39366568 |
tatagctgcagccctcgcatctagcccagaagttggctcatccatgaatattattgaaggattagctaccaattcaactgcaa |
39366486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 41 - 231
Target Start/End: Original strand, 1084411 - 1084601
Alignment:
| Q |
41 |
tatcacctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatc |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || || |||||||| |||||||| ||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
1084411 |
tatcacctcatcaaaagattcaaatatatcaatacttggttgatggatggtgcaaacaacagttcttccagtgtctactgtgctcctaactgttctcata |
1084510 |
T |
|
| Q |
141 |
acaatagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtca |
231 |
Q |
| |
|
||||| ||||| ||| |||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
1084511 |
acaatcgctgctgccattgcatctagcccagaagttggctcatccataaatattatagaaggattagaaaccaactcaactgcaatagtca |
1084601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 39588791 - 39588980
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| ||||| || ||||||||||||| ||||||||| |||| ||| |||| ||||||| |||||| |||| |
|
|
| T |
39588791 |
acctcgtcaaaagattcaaatatatgaatgctgggctgatgaatggtacaaacaattgttcttcctgtgtccactatgtttctaactgctctcataacaa |
39588890 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtcaacc |
234 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
39588891 |
tagatgcagcccttgcatctagccccgaagttggctcatccatgaatattatagaaggattagccactaactcaactgcaactgtcaacc |
39588980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 45 - 232
Target Start/End: Original strand, 39574323 - 39574510
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||| |||||||| |||| |||||||||||||| ||| |||||||||||| |||||| |||| |
|
|
| T |
39574323 |
acctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccagtgtccactatgttcctaactgctctcataacaa |
39574422 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtcaa |
232 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| |||||||||||||| || ||||||||| |||| ||||||||||| ||||| |
|
|
| T |
39574423 |
tagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaa |
39574510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 234
Target Start/End: Original strand, 39621656 - 39621847
Alignment:
| Q |
43 |
tcacctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcac |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | || || |||| ||| ||||| ||||||||| | | ||| | || |||| | |||||| || |
|
|
| T |
39621656 |
tcacctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcataac |
39621755 |
T |
|
| Q |
143 |
aatagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtcaacc |
234 |
Q |
| |
|
|||||| ||| |||||||||||||| |||||||| ||||||||||| |||||||||||||| || || ||||| || ||||| ||||||| |
|
|
| T |
39621756 |
aatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacc |
39621847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 42132579 - 42132747
Alignment:
| Q |
46 |
cctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaat |
145 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| || ||||| || || || ||||| ||||| || |||| ||||||||| || || |||| ||||||||| |
|
|
| T |
42132579 |
cctcatcaaaagcttcaaaaatatcaatgcttggttggtgaattgtgcacacaacagttctccctgtgtctactgtgtttctcacagttcgcatcacaat |
42132678 |
T |
|
| Q |
146 |
agctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaa |
214 |
Q |
| |
|
|| || || || ||||| || || || ||||||||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
42132679 |
ggcagcggctctagcatcaaggcctgatgttggttcatccatgaagatgattgaagggttagcaaccaa |
42132747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 42171388 - 42171556
Alignment:
| Q |
46 |
cctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaat |
145 |
Q |
| |
|
|||||||||||| |||||| ||||| |||| || || || || || |||||||| ||||| || || | |||||| || || || || | ||| ||||| |
|
|
| T |
42171388 |
cctcatcaaaagcttcaaaaatatccgtgcttggttgatgaattgtgcaaacaacagttctccctgtatctactgtatttctcacggtccgcataacaat |
42171487 |
T |
|
| Q |
146 |
agctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaa |
214 |
Q |
| |
|
||| || || || ||||| || || || ||||||||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
42171488 |
agcagcggctctagcatcaaggcctgatgttggttcatccatgaagatgattgaagggttagcaaccaa |
42171556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 44210553 - 44210742
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||||| || ||||||||||| |||||||||||||| |||| ||||||||||| || |||||||| |||| |
|
|
| T |
44210553 |
acctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa |
44210652 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtcaacc |
234 |
Q |
| |
|
| || ||||| || ||||||| ||||||||||||||||||||||| ||||| || |||||||| || | ||||||||||| ||||||| |
|
|
| T |
44210653 |
ttgcagcagctctagcatctaaaccagaagttggttcatccatgaaaattatggacggattagccactagttcaactgcaatagtcaacc |
44210742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 45 - 231
Target Start/End: Original strand, 44233575 - 44233761
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||| ||||||||||| || |||||||| |||| |
|
|
| T |
44233575 |
acctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa |
44233674 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtca |
231 |
Q |
| |
|
| || ||||| || ||||||| |||||||| || |||||||| || ||||| || |||||||| || | ||||||||||| |||| |
|
|
| T |
44233675 |
ttgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagccacaagttcaactgcaatagtca |
44233761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 208
Target Start/End: Original strand, 43456937 - 43457086
Alignment:
| Q |
59 |
ttcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaatagctgcagccctt |
158 |
Q |
| |
|
|||||| ||||| || ||||||||||| || || || ||||||||||||||||||| || ||||| || ||||| ||||| ||||| |||||||| ||| |
|
|
| T |
43456937 |
ttcaaagatatcgatactaggctggtgaattgtgcagacaactgttcttccagtgtcaacagtgtttctcactgtcctcataacaattgctgcagctctt |
43457036 |
T |
|
| Q |
159 |
gcatctagcccagaagttggttcatccatgaatattattgaaggattagc |
208 |
Q |
| |
|
||||| || || |||||||||||||||||||| || |||||||||||||| |
|
|
| T |
43457037 |
gcatcaagacctgaagttggttcatccatgaaaatgattgaaggattagc |
43457086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 208
Target Start/End: Original strand, 44222753 - 44222916
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||||| || ||||||||||| |||||||||||||| |||| ||||||||||| || |||| ||| |||| |
|
|
| T |
44222753 |
acctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggtacacacaactgttcttcccgtgtccactgtgttccttacagttcgcataacaa |
44222852 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagc |
208 |
Q |
| |
|
| || || || || ||||||| |||||||| || ||||||||||| ||||| || |||||||| |
|
|
| T |
44222853 |
ttgcagccgctctagcatctaaaccagaagtaggctcatccatgaaaattatagatggattagc |
44222916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 231
Target Start/End: Complemental strand, 4501863 - 4501677
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||| || || || || || ||||||||||||||||| | || ||||| || || || ||||| |||| |
|
|
| T |
4501863 |
acctcatcaaaggcttcaaagatatcaatgctaggttgatgaattgtgcacacaactgttcttccagtatcaacagtgtttcttacagtcctcataacaa |
4501764 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtca |
231 |
Q |
| |
|
|||| || || ||||||||||| ||||||||||| |||||||||||||| |||||||||||||| || | ||| || |||||||||| |
|
|
| T |
4501763 |
tagcagctgctcttgcatctagaccagaagttggctcatccatgaatatgattgaaggattagcaacaagctcgaccgcaattgtca |
4501677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 5196339 - 5196171
Alignment:
| Q |
46 |
cctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaat |
145 |
Q |
| |
|
|||||||||||| || ||| ||||||||||| || |||| || || || |||| |||||| | || | ||||||||| || || ||| ||||||||| |
|
|
| T |
5196339 |
cctcatcaaaagcttaaaaaatatcaatgcttggttggtaaattgtgcacacaaatgttctccatgtatctactgtgtttctcacagtttgcatcacaat |
5196240 |
T |
|
| Q |
146 |
agctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaa |
214 |
Q |
| |
|
||| || || || ||||| || | || ||||||||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
5196239 |
agcagcggctctagcatcaagatctgatgttggttcatccatgaagatgattgaagggttagcaaccaa |
5196171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 226
Target Start/End: Original strand, 2896770 - 2896951
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| || || || || ||||| ||||||||||||||||| |||| || |||||||||||||||| ||| |||| |
|
|
| T |
2896770 |
acctcatcaaaagcttcgaatatgtcaatacttggttgatgaatggtgcaaacaactgttcttcctgtgtcaaccgtgttcctaactgttcgcataacaa |
2896869 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaat |
226 |
Q |
| |
|
| || ||||| || ||||||| ||||| || || ||||||||||| ||||| || ||||| || || || ||||||||||| |
|
|
| T |
2896870 |
ttgcagcagctctagcatctaatccagatgtaggctcatccatgaaaattatggatggattggccactaattcaactgcaat |
2896951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 2878061 - 2877884
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||||||||||||||||||||| || || || || || || ||||||||||||||||||||||| |||| || ||||||||||| |||| ||| |||| |
|
|
| T |
2878061 |
acctcatcaaaagattcaaatatgtcgatacttggttgatgaatggtacaaacaactgttcttcctgtgtcaaccgtgttcctaacggttcgcataacaa |
2877962 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactg |
222 |
Q |
| |
|
| || ||||| || ||||||| ||||| || || || |||||||| ||||| || ||||| || || || ||||||| |
|
|
| T |
2877961 |
ttgcagcagctctagcatctaatccagatgtaggctcgtccatgaaaattatggatggattggccactaattcaactg |
2877884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 226
Target Start/End: Complemental strand, 2887584 - 2887403
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| || || || || ||||| ||||||||||||||||| |||| || ||||||||||| |||| ||| |||| |
|
|
| T |
2887584 |
acctcatcaaaagcttcgaatatgtcaatacttggttgatgaatggtgcaaacaactgttcttcctgtgtcaaccgtgttcctaacggttcgcataacaa |
2887485 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaat |
226 |
Q |
| |
|
| || ||||| || ||||||| ||||| || || ||||||||||| ||||| || ||||| || || || ||||||||||| |
|
|
| T |
2887484 |
ttgcagcagctctagcatctaatccagatgtaggctcatccatgaaaattatggatggattggccactaattcaactgcaat |
2887403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 53668549 - 53668717
Alignment:
| Q |
46 |
cctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaat |
145 |
Q |
| |
|
|||||||||||| || ||| ||||||||||| || ||||| || || || ||||| ||||| | |||| ||||||||| || || |||| ||||||||| |
|
|
| T |
53668549 |
cctcatcaaaagcttaaaaaatatcaatgcttggttggtgaattgtgcacacaaccgttctccatgtgtctactgtgtttctcacagttcgcatcacaat |
53668648 |
T |
|
| Q |
146 |
agctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaa |
214 |
Q |
| |
|
||| || || || ||||| || || | ||||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
53668649 |
agcagcggctctagcatcaaggcctaatgttggttcatccatgaagatgattgaaggattagcaaccaa |
53668717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 46452382 - 46452264
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||| |||||||| || |||| |||| ||||| ||||| | ||||| || ||||||||||||| |
|
|
| T |
46452382 |
acctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaa |
46452283 |
T |
|
| Q |
145 |
tagctgcagcccttgcatc |
163 |
Q |
| |
|
| ||||||||||| ||||| |
|
|
| T |
46452282 |
tggctgcagccctagcatc |
46452264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 226
Target Start/End: Complemental strand, 49773743 - 49773562
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| || || || || ||||| ||||| || |||| ||||| ||||| ||||||||||| || | |
|
|
| T |
49773743 |
acctcatcaaaagcatcaaatatatcaatactaggctgatgaattgtgcagacaacagttctccctgtgtccactgtattcctcactgttctcattacta |
49773644 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaat |
226 |
Q |
| |
|
|||| ||||| |||||||| || ||||| || ||||||||||||||||| || || ||||| || || | ||||||||||| |
|
|
| T |
49773643 |
tagcagcagctcttgcatcaaggccagaggtaggttcatccatgaatataatagatggattggcaacaagttcaactgcaat |
49773562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 12717006 - 12717168
Alignment:
| Q |
46 |
cctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaat |
145 |
Q |
| |
|
|||||||||||| || ||| ||||||||||| || ||||| || || || ||||| ||||| || |||| ||||||||| || || |||| ||||||||| |
|
|
| T |
12717006 |
cctcatcaaaagcttaaaaaatatcaatgcttggttggtgaattgtgcacacaacagttctccctgtgtctactgtgtttctcacagttcacatcacaat |
12717105 |
T |
|
| Q |
146 |
agctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagc |
208 |
Q |
| |
|
||| || || || ||||| || || || ||||||||||||||||| || |||||||| ||||| |
|
|
| T |
12717106 |
agcagcggctctagcatcaaggcctgatgttggttcatccatgaagatgattgaagggttagc |
12717168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 232
Target Start/End: Original strand, 25522821 - 25523008
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||||||||| | ||||||||||||||| || ||||| || ||||||||||| || ||||||||||| | || || || | ||| |||||||| |||| |
|
|
| T |
25522821 |
acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcaacagtattgcgaacagttctcataacaa |
25522920 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtcaa |
232 |
Q |
| |
|
| || || || | |||||| || || || || |||||||||||||| ||||| ||||| || ||||| | || ||||| |||||||| |
|
|
| T |
25522921 |
tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtttgctacaagttccactgctattgtcaa |
25523008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 214
Target Start/End: Complemental strand, 49670154 - 49669993
Alignment:
| Q |
53 |
aaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaatagctgca |
152 |
Q |
| |
|
||||| || ||| ||||||||||| || ||||| || || || ||||| |||| | |||| ||||||||| || | |||| |||||||||||| | |
|
|
| T |
49670154 |
aaaagcttaaaaaatatcaatgcttggttggtgaattgtgcacacaacaattctccatgtgtctactgtgtttctcgcagttcgcatcacaatagcagtg |
49670055 |
T |
|
| Q |
153 |
gcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaa |
214 |
Q |
| |
|
|| || ||||| || || || ||||||||||| ||||| ||||||||||| ||||| ||||| |
|
|
| T |
49670054 |
gctctagcatcaaggcctgatgttggttcatctatgaagattattgaagggttagcaaccaa |
49669993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 8919 - 8751
Alignment:
| Q |
46 |
cctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaat |
145 |
Q |
| |
|
|||||||||||| || ||| |||||||| || || ||||| || || || ||||| |||| || |||| ||||||||| || || |||| ||||||||| |
|
|
| T |
8919 |
cctcatcaaaagcttaaaaaatatcaatacttggttggtgaattgtgcacacaacatttctccctgtgtctactgtgtttctcacagttcgcatcacaat |
8820 |
T |
|
| Q |
146 |
agctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaa |
214 |
Q |
| |
|
||| ||||| || ||||| || || || | |||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
8819 |
agcagcagctctagcatcaaggcctgatgatggttcatccatgaatatgattgaagggttagcaaccaa |
8751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 211
Target Start/End: Original strand, 2160223 - 2160389
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||||||||| | || ||||| ||||| || ||||| ||||| || |||||||| || | ||| |||| ||||||||||| ||||||||||| |||| |
|
|
| T |
2160223 |
acctcatcaaaggcgtcgaatatgtcaatacttggctgatggattgtgcaaacaacagtacgtcctgtgtcaactgtgttcctcactgttctcattacaa |
2160322 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctac |
211 |
Q |
| |
|
| || || || || ||||| || ||||| ||||| ||||||||||||||||| || ||||| ||||| |
|
|
| T |
2160323 |
ttgcagctgctctagcatcaaggccagaggttggctcatccatgaatattatcgatggattcgctac |
2160389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 226
Target Start/End: Original strand, 2148395 - 2148576
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
144 |
Q |
| |
|
||||||||||| || |||||||| ||||| || ||||| ||||| || || || || || | ||| |||| || |||||||| ||||||| ||| |||| |
|
|
| T |
2148395 |
acctcatcaaaggaatcaaatatgtcaatactcggctgatggatcgtgcacaccacggtacgtcctgtgtccacagtgttccttactgttcgcattacaa |
2148494 |
T |
|
| Q |
145 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaat |
226 |
Q |
| |
|
| || || || | ||||| || ||||| ||||||||||||||||||||||| || ||||| ||||| | ||||||||||| |
|
|
| T |
2148495 |
tcgcagctgctcgagcatccaggccagaggttggttcatccatgaatattatcgatggattcgctacaagttcaactgcaat |
2148576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 25986625 - 25986785
Alignment:
| Q |
47 |
ctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaata |
146 |
Q |
| |
|
||||||||||| || ||| ||||||||||| || ||||| || || || ||||| ||||| || |||| ||| ||||| || || |||| |||| ||||| |
|
|
| T |
25986625 |
ctcatcaaaagcttaaaaaatatcaatgcttggttggtgaattgtgcacacaacagttctccctgtgtctaccgtgtttctcacagttcgcatctcaata |
25986724 |
T |
|
| Q |
147 |
gctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattag |
207 |
Q |
| |
|
|| || || || ||||| || || || ||||||||||||||||| || |||||||| |||| |
|
|
| T |
25986725 |
gcagcggctctagcatcaaggcctgatgttggttcatccatgaagatgattgaagggttag |
25986785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 41687151 - 41687191
Alignment:
| Q |
45 |
acctcatcaaaagattcaaatatatcaatgctaggctggtg |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
41687151 |
acctcatcaaaagattcaaatatatcaatgcttggttggtg |
41687191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 10901718 - 10901820
Alignment:
| Q |
46 |
cctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaat |
145 |
Q |
| |
|
|||||||||||| || ||| ||||||||||| || ||||| || || || ||||| |||||||| |||| ||||||||| || || |||| ||||||||| |
|
|
| T |
10901718 |
cctcatcaaaagcttaaaaaatatcaatgcttggttggtgaattgtgcacacaacagttcttcctgtgtctactgtgtttctcacagttcacatcacaat |
10901817 |
T |
|
| Q |
146 |
agc |
148 |
Q |
| |
|
||| |
|
|
| T |
10901818 |
agc |
10901820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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