View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0993_low_3 (Length: 549)

Name: NF0993_low_3
Description: NF0993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0993_low_3
NF0993_low_3
[»] chr2 (1 HSPs)
chr2 (3-110)||(24169568-24169677)
[»] chr7 (1 HSPs)
chr7 (3-91)||(11583737-11583827)
[»] scaffold0520 (1 HSPs)
scaffold0520 (466-521)||(6016-6071)
[»] chr1 (3 HSPs)
chr1 (416-497)||(21979799-21979880)
chr1 (416-497)||(21982017-21982098)
chr1 (466-499)||(22822703-22822736)
[»] chr5 (1 HSPs)
chr5 (416-493)||(23988201-23988279)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 24169568 - 24169677
Alignment:
Q  3 ctcaaaatgcttccattcaagatatgtg--agtcaattcaaaagtggaatgatcttggggtgaacgccgatatcttttatgcctcatcttgtcctaaaaa 100  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||    
T  24169568 ctcaaaatgcttccattcaagatatgcgggagtcaattcaaaagtggaatgatcttggggtgaaccccgatatcttttatgccttaccttgtcctaaaaa 24169667  T
Q  101 taccacaccg 110  Q
    ||||||||||    
T  24169668 taccacaccg 24169677  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 11583827 - 11583737
Alignment:
Q  3 ctcaaaatgcttccattcaagatatgtg--agtcaattcaaaagtggaatgatcttggggtgaacgccgatatcttttatgcctcatcttg 91  Q
    |||||||||| ||||||||||||||| |  |||| |||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||||    
T  11583827 ctcaaaatgcatccattcaagatatgcgggagtccattcaaaagtggaatgatcttggggtgaacaccgataccttttttgcctcaccttg 11583737  T

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Target: scaffold0520 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 6016 - 6071
Alignment:
Q  466 tttgacattatcaaaaagggggagattgaagccttcagttatagtattgatgatgt 521  Q
    |||||||| ||||||||| ||||||||||||||| ||| |||||| ||||||||||    
T  6016 tttgacatcatcaaaaagagggagattgaagcctccagctatagttttgatgatgt 6071  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 21979799 - 21979880
Alignment:
Q  416 tgtcttgtatgctaagtttcagggggagaagctaatcatcaacagagggctttgacattatcaaaaagggggagattgaagc 497  Q
    |||||||||||| |||||| |||||||| |  ||||||||||||    | |||||||| ||| |||||||||||||||||||    
T  21979799 tgtcttgtatgccaagttttagggggagcaaataatcatcaacatgatgttttgacatcatcgaaaagggggagattgaagc 21979880  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 21982017 - 21982098
Alignment:
Q  416 tgtcttgtatgctaagtttcagggggagaagctaatcatcaacagagggctttgacattatcaaaaagggggagattgaagc 497  Q
    |||||||||||| |||||| |||||||| |  ||||||||||||    | |||||||| ||| ||||||||||||| |||||    
T  21982017 tgtcttgtatgccaagttttagggggagcaaataatcatcaacatgatgttttgacatcatcgaaaagggggagatcgaagc 21982098  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 499
Target Start/End: Complemental strand, 22822736 - 22822703
Alignment:
Q  466 tttgacattatcaaaaagggggagattgaagcct 499  Q
    |||||||| |||||||||||||||||||||||||    
T  22822736 tttgacatcatcaaaaagggggagattgaagcct 22822703  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 23988279 - 23988201
Alignment:
Q  416 tgtcttgtatgctaagtttcagggggagaagctaatcatcaacagag-ggctttgacattatcaaaaagggggagattg 493  Q
    ||||||||||||||||||||| |||||| |  | ||| |||||| || || |||||||| ||||||||| |||||||||    
T  23988279 tgtcttgtatgctaagtttcacggggagcaaattatcgtcaacatagtgggtttgacatcatcaaaaagagggagattg 23988201  T

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