View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0993_low_4 (Length: 339)

Name: NF0993_low_4
Description: NF0993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0993_low_4
NF0993_low_4
[»] chr7 (14 HSPs)
chr7 (7-330)||(39563248-39563576)
chr7 (48-253)||(39354330-39354534)
chr7 (42-330)||(39537172-39537471)
chr7 (28-259)||(39366927-39367157)
chr7 (29-330)||(39546619-39546933)
chr7 (6-203)||(39339538-39339732)
chr7 (29-238)||(1083986-1084196)
chr7 (53-212)||(39621241-39621400)
chr7 (53-171)||(39588386-39588504)
chr7 (285-330)||(39366824-39366869)
chr7 (52-183)||(39573907-39574038)
chr7 (292-330)||(39339398-39339436)
chr7 (292-330)||(39354243-39354281)
chr7 (48-77)||(39339727-39339756)
[»] chr4 (1 HSPs)
chr4 (121-180)||(2896424-2896483)
[»] chr1 (1 HSPs)
chr1 (131-174)||(2159901-2159944)
[»] chr2 (2 HSPs)
chr2 (124-168)||(44210194-44210238)
chr2 (124-168)||(44233215-44233259)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 39563248 - 39563576
Alignment:
Q  7 attttctgattctatagtttg-----atttgatttgatttcatacaagtgaaaatacctgtataactctgaattttggtacacctctgcaaaatcaatcc 101  Q
    |||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39563248 attttctgattctatagtttgatttgatttgatttgatttcatacaagtgaaaatacctgtataactctgaattttggtacacctctgcaaaatcaatcc 39563347  T
Q  102 ccaattccctttctttagatgaagttgtgacttccaacatccacgttgctggattataaccgtctttaatcttgctaacaccatggatccccttcaagac 201  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39563348 ccaattccctttcttttgatgaagttgtgacttccaacatccatgttgctggattataaccgtctttaatcttgctaacaccatggatccccttcaagac 39563447  T
Q  202 aaaagtgtgtacttatcgaaatgttaacaaaagataacaatttgaaacataataatgattacttttaattggatatctatatctattttgtacctacctc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39563448 aaaagtgtgtacttatcgaaatgttaacaaaagataacaatttgaaacataataatgattacttttaattggatatctatatctattttctacctacctc 39563547  T
Q  302 aaagtaattgattaaattggaagaattat 330  Q
    |||||||||||||||||||||||||||||    
T  39563548 aaagtaattgattaaattggaagaattat 39563576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 48 - 253
Target Start/End: Complemental strand, 39354534 - 39354330
Alignment:
Q  48 agtgaaaatacctgtataactctgaattttggtacacctctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccacgt 147  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39354534 agtgaaaatacctgtataactctgaatttttgtacaactctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccatgt 39354435  T
Q  148 tgctggattataaccgtctttaatcttgctaacaccatggatccccttcaagacaaaagtgtgtacttatcgaaatgttaacaa-aagataacaatttga 246  Q
    ||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||  |||||||||| | | ||||||||||||| ||||||| |||||||    
T  39354434 tgctggattataaccgtctttgatctttctaacaccttggattcccttcaagac--aagtgtgtacattttgaaatgttaacaagaagataataatttga 39354337  T
Q  247 aacataa 253  Q
    | |||||    
T  39354336 agcataa 39354330  T

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Target: chr7; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 42 - 330
Target Start/End: Original strand, 39537172 - 39537471
Alignment:
Q  42 catacaagtgaaaatacctgtataactctgaattttggtacacctctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacat 141  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39537172 cataccagtgaaaatacctgtataactctgaatttttgtacacctctgcaaaatcaatccccaattccctttctttagatgaagtggtgacttccaacat 39537271  T
Q  142 ccacgttgctggattataaccgtctttaatcttgctaacaccatggatccccttcaagacaaaagtgtgtacttatcgaaatgttaacaa-aagataaca 240  Q
    ||| ||||||||||||||||||| |||||||||||||||||| |  || |||||||||||  |||| ||||| | | | |||||| |||| | ||||| |    
T  39537272 ccatgttgctggattataaccgtatttaatcttgctaacaccttttattcccttcaagac--aagtatgtacattttgtaatgttcacaagatgataata 39537369  T
Q  241 atttgaaacataataatga------------ttacttttaattggatatctatatctattttgtacctacctcaaagtaattgattaaattggaagaatt 328  Q
    |||| || ||||| |||||             ||||||| | ||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||    
T  39537370 atttaaagcataaaaatgaattcagtattccctacttttcaatggatatctatatctatattctacctacctcaaagtagctgattaaattggaagaatt 39537469  T

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Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 28 - 259
Target Start/End: Complemental strand, 39367157 - 39366927
Alignment:
Q  28 atttgatttgatttcatacaagtgaaaatacctgtataactctgaattttggtacacctctgcaaaatcaatccccaattccctttctttagatgaagtt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  || |||  |||||| |||||||||    
T  39367157 atttgatttgatttcatacaagtgaaaatacctgtataactctgaatttttgtacacctctgcataatcaatccgtaactccacttctttggatgaagtt 39367058  T
Q  128 gtgacttccaacatccacgttgctggattataaccgtctttaatcttgctaacaccatggatccccttcaagacaaaagtgtgtact-tatcgaaatgtt 226  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |  |||||||||||||  ||||||||  ||| |||| |||    
T  39367057 gtgacttccaacatccatgttgctggattataaccgtctttaatcttgctaacaccttgtactcccttcaagacaa--gtgtgtacactat-gaaacgtt 39366961  T
Q  227 aacaaa-agataacaatttgaaacataataatga 259  Q
    |||||  |||||| |||||||||||||| |||||    
T  39366960 aacaagtagataataatttgaaacataaaaatga 39366927  T

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Target: chr7; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 29 - 330
Target Start/End: Original strand, 39546619 - 39546933
Alignment:
Q  29 tttgatttgatttcatacaagtgaaaatacctgtataactctgaattttggtacacctctgcaaaatcaatccccaattccctttctttagatgaagttg 128  Q
    ||||||| ||||  ||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||   ||||||||||||| |||    
T  39546619 tttgattagattatatataagtgaaaatacctgtataaatctgaatttttgtacacctctgcaaaatcaatccccaaatctacttctttagatgaatttg 39546718  T
Q  129 tgacttccaacatccacgttgctggattataaccgtctttaatcttgctaacaccatggatccccttcaagacaaaagtgtgtacttatcgaaatgttaa 228  Q
    ||| |||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||| |||||||| | |||||| || || ||| ||  | ||||    
T  39546719 tgatttccaacatccatgttgctggattataaccctctttgatcttgttaacaccatggattcccttcaacataaaagtatggacgtattgagctattaa 39546818  T
Q  229 c-aaaagataacaatttgaaacataataatga------------ttacttttaattggatatctatatctattttgtacctacctcaaagtaattgatta 315  Q
    | |||||||||  ||||||| ||||| |||||             ||||||| | ||||||||||||||||| || ||||||||||||||||  ||||||    
T  39546819 caaaaagataatgatttgaaccataaaaatgaattcagaattccgtacttttcactggatatctatatctatattctacctacctcaaagtagctgatta 39546918  T
Q  316 aattggaagaattat 330  Q
    |||||||||||||||    
T  39546919 aattggaagaattat 39546933  T

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Target: chr7; HSP #6
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 39339732 - 39339538
Alignment:
Q  6 aattttctgattctatagtttgatttgatttgatttcatacaagtgaaaatacctgtataactctgaattttggtacacctctgcaaaatcaatccccaa 105  Q
    ||||||||| ||||||||||||||| ||||   |   |||| |||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  39339732 aattttctggttctatagtttgattagattgtgt---ataccagtgaaaatacctgtataactctgaatttttgtacaactctacaaaatcaatccccaa 39339636  T
Q  106 ttccctttctttagatgaagttgtgacttccaacatccacgttgctggattataaccgtctttaatcttgctaacaccatggatccccttcaagacaa 203  Q
    ||||  ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |||||    
T  39339635 ttccacttctttagatgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttggattcccttcatgacaa 39339538  T

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Target: chr7; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 238
Target Start/End: Original strand, 1083986 - 1084196
Alignment:
Q  29 tttgatttgatttcatacaagtgaaaatacctgtataactctgaattttggtacacctctgcaaaatcaatccccaattccctttctttagatgaagttg 128  Q
    ||||||| |||| |||||||| |||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||  ||| |||||||||| ||    
T  1083986 tttgattagattgcatacaagggaaaatacctgtataactgtgagtttttgtacacctctgcaaaatcaatccctaattccacttccttagatgaagctg 1084085  T
Q  129 tgacttccaacatccacgttgctggattataaccgtctttaatcttgctaacaccatggatccccttcaagacaaaagtgtgtacttatcgaaatgttaa 228  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||||| | ||||||| |||||  ||| ||||| ||||    
T  1084086 tgacttccaacatccatgttgctggattataaccgtctttaatcttggtaacaccttggattcccttcgacacaaaagagtgtagatattgaaatattaa 1084185  T
Q  229 ca-aaagataa 238  Q
    || ||||||||    
T  1084186 cataaagataa 1084196  T

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Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 53 - 212
Target Start/End: Original strand, 39621241 - 39621400
Alignment:
Q  53 aaatacctgtataactctgaattttggtacacctctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccacgttgctg 152  Q
    |||||||||||||| |||||||||| |||||| || | |||||||||| |||||| | |||||||   |||||  || | |||||||||||| | |||||    
T  39621241 aaatacctgtataattctgaatttttgtacacttcagaaaaatcaatctccaattgcatttctttttctgaagaagtaatttccaacatccaagctgctg 39621340  T
Q  153 gattataaccgtctttaatcttgctaacaccatggatccccttcaagacaaaagtgtgta 212  Q
    | ||| |||| |||| |||||| || ||||| |  |||||||||||||||||||||||||    
T  39621341 ggttacaaccatcttcaatcttactgacaccttcaatccccttcaagacaaaagtgtgta 39621400  T

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Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 39588386 - 39588504
Alignment:
Q  53 aaatacctgtataactctgaattttggtacacctctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccacgttgctg 152  Q
    ||||||||||||||   |||||||  ||||||||| |||||||||| ||| |||||   ||||||||||||||| ||||||||||| ||||| |||||||    
T  39588386 aaatacctgtataatgttgaatttatgtacacctcagcaaaatcaacccctaattctaattctttagatgaagtagtgacttccaaaatccaagttgctg 39588485  T
Q  153 gattataaccgtctttaat 171  Q
    ||||||| || ||||||||    
T  39588486 gattatatccatctttaat 39588504  T

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Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 39366869 - 39366824
Alignment:
Q  285 tattttgtacctacctcaaagtaattgattaaattggaagaattat 330  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  39366869 tattttctacctacctcaaagtaattgattaaattggaagaattat 39366824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 183
Target Start/End: Original strand, 39573907 - 39574038
Alignment:
Q  52 aaaatacctgtataactctgaattttggtacacctctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccacgttgct 151  Q
    |||||||||||| || |||||  ||| ||||||||| ||||||| |||| ||| |||| ||||||| | |||  | || |||||||||||||| ||||||    
T  39573907 aaaatacctgtacaattctgagcttttgtacacctcagcaaaattaatctccatttccatttcttttgctgagctagtaacttccaacatccaagttgct 39574006  T
Q  152 ggattataaccgtctttaatcttgctaacacc 183  Q
    ||||| || || ||||||| ||| || |||||    
T  39574007 ggattgtagccatctttaagcttactgacacc 39574038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 39339436 - 39339398
Alignment:
Q  292 tacctacctcaaagtaattgattaaattggaagaattat 330  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  39339436 tacctacctcaaagtgattgattaaattggaagaattat 39339398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 39354281 - 39354243
Alignment:
Q  292 tacctacctcaaagtaattgattaaattggaagaattat 330  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  39354281 tacctacctcaaagtgattgattaaattggaagaattat 39354243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 39339756 - 39339727
Alignment:
Q  48 agtgaaaatacctgtataactctgaatttt 77  Q
    ||||||||||||||||||||||||||||||    
T  39339756 agtgaaaatacctgtataactctgaatttt 39339727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 2896424 - 2896483
Alignment:
Q  121 tgaagttgtgacttccaacatccacgttgctggattataaccgtctttaatcttgctaac 180  Q
    |||| |||| |||||||||||||| |||||||||||||| || |||||||| || |||||    
T  2896424 tgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaac 2896483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 2159901 - 2159944
Alignment:
Q  131 acttccaacatccacgttgctggattataaccgtctttaatctt 174  Q
    |||||||||||||| ||||| ||||||||||| |||||||||||    
T  2159901 acttccaacatccatgttgcaggattataaccatctttaatctt 2159944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 44210194 - 44210238
Alignment:
Q  124 agttgtgacttccaacatccacgttgctggattataaccgtcttt 168  Q
    |||||| |||||||||||||| |||||||| ||||| ||||||||    
T  44210194 agttgtaacttccaacatccatgttgctgggttatatccgtcttt 44210238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 44233215 - 44233259
Alignment:
Q  124 agttgtgacttccaacatccacgttgctggattataaccgtcttt 168  Q
    |||||| |||||||||||||| |||||||| ||||| ||||||||    
T  44233215 agttgtaacttccaacatccatgttgctgggttatatccgtcttt 44233259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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