View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0994_low_1 (Length: 476)
Name: NF0994_low_1
Description: NF0994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0994_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 26752445 - 26752062
Alignment:
| Q |
1 |
cagacgaactattcgtctggcttctacaaactattttttgacaatgataacattcttcgtcttttatatcaaggaccgagagtatctagcatttattggc |
100 |
Q |
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| T |
26752445 |
cagacgaactattcgtctggcttctacaaactattttttgacaatgataacattcttcgtcttttatatcaaggaccgagagtatctagcatttattggc |
26752346 |
T |
|
| Q |
101 |
cagatccttggactacaagcaatggtgcagctggtagtggtaccagaagtacttacaatagtagtagaatcgcgtcgttggattcatttggtagttttag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26752345 |
cagatccttggactacaagcaatggtgcagctggtagtggtacaagaagtacttacaatagtagtagaatcgcgtcgttggattcgtttggtagttttag |
26752246 |
T |
|
| Q |
201 |
ttcatctgatgattttgtttttaatactgctgattatggaacttttttgcaacgtagacttacacttgatcatgatggtaacgttcgcatttatagtaga |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26752245 |
ttcttctgatgattttgtttttaatactgctgattatggaacttttttgcaacgtagacttacacttgatcatgatggtaacgttcgcatttatagtaga |
26752146 |
T |
|
| Q |
301 |
aaagatgaggaacagggttggtttgtttcgggtcaatttcgtcaacaaccttgttttattcatggaatttgtgggcctaatagt |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26752145 |
aaagatgaggaacagggttggtttgtttcgggtcaatttcgtcaacaaccttgttttattcatggaatttgtgggcctaatagt |
26752062 |
T |
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