View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0994_low_3 (Length: 252)
Name: NF0994_low_3
Description: NF0994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0994_low_3 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] chr5 (6 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 149109 - 148885
Alignment:
| Q |
28 |
agaaaaaccgagtgtctgagaccaaaatgccatttctctgtagcttttccctatcacattaattatgttgaaggttggtaacaaaatcgtttcggagatt |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
149109 |
agaaaaaccgagtgtctgagaccaaaatgccatttctctgtagcttttccctatcacattaattatgttgaaggttggtgacaaaatcgtttcggagatt |
149010 |
T |
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| Q |
128 |
tcttcaagtcttaactttccttgtgatgatttatttgcagcttcaacaatagctttagctgcatcatatgcttgaagtgcaaagatacttgggttaatgt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
149009 |
tcttcaagtcttaactttccttgtgatgatttatttgcagcttcaacaatagctttagctgcatcatatgcttgaagtgcaaagatacttgggttaatgt |
148910 |
T |
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| Q |
228 |
tatcttcttcagggtattctagtgc |
252 |
Q |
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||||||||||||||||||||||||| |
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| T |
148909 |
tatcttcttcagggtattctagtgc |
148885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 45 - 252
Target Start/End: Complemental strand, 140483 - 140276
Alignment:
| Q |
45 |
gagaccaaaatgccatttctctgtagcttttccctatcacattaattatgttgaaggttggtaacaaaatcgtttcggagatttcttcaagtcttaactt |
144 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
140483 |
gagaccaaaatgccatttctctataacttttccctatcacattaattatgttgaaggttggtgacaaaatcgtttcggagatttcttcaagtcttaactt |
140384 |
T |
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| Q |
145 |
tccttgtgatgatttatttgcagcttcaacaatagctttagctgcatcatatgcttgaagtgcaaagatacttgggttaatgttatcttcttcagggtat |
244 |
Q |
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| T |
140383 |
tccttgtgatgatttttttgcagtttcaacaatagctttagttgcatcatatgcttgaaatgcaaagatacttgggttaatgctatcttcttcagggtat |
140284 |
T |
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| Q |
245 |
tctagtgc |
252 |
Q |
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|||||||| |
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| T |
140283 |
tctagtgc |
140276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 108 - 252
Target Start/End: Complemental strand, 24897745 - 24897601
Alignment:
| Q |
108 |
acaaaatcgtttcggagatttcttcaagtcttaactttccttgtgatgatttatttgcagcttcaacaatagctttagctgcatcatatgcttgaagtgc |
207 |
Q |
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|||||||| |||| |||| || ||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
24897745 |
acaaaatcttttctgagaattgttcaagtctgaactttccttgtgataatttatttgcagcttcagcaatagctttagctgcataatatgcttgaagtgc |
24897646 |
T |
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| Q |
208 |
aaagatacttgggttaatgttatcttcttcagggtattctagtgc |
252 |
Q |
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|||| |||||||||||| | ||||||||||||||||||||||||| |
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| T |
24897645 |
aaagttacttgggttaacgctatcttcttcagggtattctagtgc |
24897601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 108 - 252
Target Start/End: Complemental strand, 24987351 - 24987207
Alignment:
| Q |
108 |
acaaaatcgtttcggagatttcttcaagtcttaactttccttgtgatgatttatttgcagcttcaacaatagctttagctgcatcatatgcttgaagtgc |
207 |
Q |
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|||||||| |||| |||| || ||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |
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| T |
24987351 |
acaaaatcttttctgagaattgttcaagtctgaactttacttgtgataatttatttgcagcttcagcaatagctttagttgcataatatgcttgaagtgc |
24987252 |
T |
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| Q |
208 |
aaagatacttgggttaatgttatcttcttcagggtattctagtgc |
252 |
Q |
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|||| |||||||||||| | ||||||||||||||||||||||||| |
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| T |
24987251 |
aaagttacttgggttaacgctatcttcttcagggtattctagtgc |
24987207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 108 - 252
Target Start/End: Complemental strand, 24909848 - 24909704
Alignment:
| Q |
108 |
acaaaatcgtttcggagatttcttcaagtcttaactttccttgtgatgatttatttgcagcttcaacaatagctttagctgcatcatatgcttgaagtgc |
207 |
Q |
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|||||||| |||| |||| || ||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |
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| T |
24909848 |
acaaaatcttttctgagaattgttcaagtctgaactttccttgtgataatttatttgcagcttcagcaatagctttagttgcataatatgcttgaagtgc |
24909749 |
T |
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| Q |
208 |
aaagatacttgggttaatgttatcttcttcagggtattctagtgc |
252 |
Q |
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|| | |||||||||||| ||||||||||||||||||||||||| |
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| T |
24909748 |
aatgttacttgggttaacactatcttcttcagggtattctagtgc |
24909704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 24897884 - 24897807
Alignment:
| Q |
29 |
gaaaaaccgagtgtctgagaccaaaatgccatttctctgtagcttttccctatcacattaattatgttgaaggttggt |
106 |
Q |
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|||||||| ||||| |||||||| ||||| |||||| || |||||||| ||||||||||||||||||||||||||| |
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| T |
24897884 |
gaaaaaccaagtgttgaagaccaaagtgccaattctctataacttttcccaatcacattaattatgttgaaggttggt |
24897807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 24909987 - 24909910
Alignment:
| Q |
29 |
gaaaaaccgagtgtctgagaccaaaatgccatttctctgtagcttttccctatcacattaattatgttgaaggttggt |
106 |
Q |
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| T |
24909987 |
gaaaaaccaagtgttgaagaccaaagtgccaattctctataacttttcccaatcacattaattatgttgaaggttggt |
24909910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 24987490 - 24987413
Alignment:
| Q |
29 |
gaaaaaccgagtgtctgagaccaaaatgccatttctctgtagcttttccctatcacattaattatgttgaaggttggt |
106 |
Q |
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|||||||| ||||| |||||||||| ||| |||||| || |||||||| ||||||||||||||||||||||||||| |
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| T |
24987490 |
gaaaaaccaagtgttgaagaccaaaatcccaattctctataacttttcccaatcacattaattatgttgaaggttggt |
24987413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 23472 - 23344
Alignment:
| Q |
130 |
ttcaagtcttaactttccttgtgatgattta--tttgcagctt-caacaat-agctttagct-gcatcatatgcttgaagtgcaaagatacttgggttaa |
224 |
Q |
| |
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||||||||| |||||| |||||||| ||||| |||||||||| || |||| |||||||| | |||| ||||||||||||||||||| |||||||||||| |
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| T |
23472 |
ttcaagtctgaactttacttgtgataatttaattttgcagctttcagcaattagctttagtttgcataatatgcttgaagtgcaaagttacttgggttaa |
23373 |
T |
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| Q |
225 |
tgttatcttcttcagggta-ttctagtgc |
252 |
Q |
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| T |
23372 |
cgctatcttcttcagggtagttctagtgc |
23344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 33114259 - 33114318
Alignment:
| Q |
117 |
tttcggagatttcttcaagtcttaactttccttgtgatgatttatttgcagcttcaacaa |
176 |
Q |
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|||| |||| || ||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
33114259 |
tttctgagaattgttcaagtctgaactttccttgtgataatttatttgcagcttcaacaa |
33114318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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