View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0995-Insertion-1 (Length: 1130)
Name: NF0995-Insertion-1
Description: NF0995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0995-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 958; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 958; E-Value: 0
Query Start/End: Original strand, 10 - 1129
Target Start/End: Complemental strand, 43018195 - 43017067
Alignment:
| Q |
10 |
taaaccctccattcaaatacaccctgattttcttatatctcctccactcactactatattttcctatattccctaccagtcccataattaactcaactgg |
109 |
Q |
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| T |
43018195 |
taaaccctccattcaaacataccctaattttcttatatcccctccactcacttctatattttcctatattccctaccagtcccataattaactcaactgg |
43018096 |
T |
|
| Q |
110 |
ctgccccacaatctacttcggaattactcactactatattttcctaaagtattggttacgtgaaacataggaaacatattttcttatatcccttccactc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43018095 |
ctgccccacaatctacttcggaattactcactactatattttcctaaagtattggttacgtgaaacataggaaacatattttcttatatcccttccactc |
43017996 |
T |
|
| Q |
210 |
attactatattttcctatattcccgaccaatctactatcggaattactcactactatatatattttcctaaagtattggtcacgtgaaacatgcatacac |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017995 |
attactatattttcctatattcccgaccaatctactatcggaattactcactactatatatattttcctaaagtattggtcacgtgaaacatgcatacac |
43017896 |
T |
|
| Q |
310 |
aaaccatgtgtattagagaatatgaatgtgacaaaataatctattatgattttctttttagtataaaaaataatctattatgaattataggccgnnnnnn |
409 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017895 |
aaaccatgtgtattagagaatatgaatgtgacaaaataatctattatgattttctttttagtataaaaaataatctattatgaattataggccaaaaaaa |
43017796 |
T |
|
| Q |
410 |
ntgaaatattctgtttggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaat |
509 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017795 |
atgaaatattctgtttggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaat |
43017696 |
T |
|
| Q |
510 |
caaggctatccaaaaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagt |
609 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017695 |
caaggctatccaaaaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagt |
43017596 |
T |
|
| Q |
610 |
gactctttcaaaagctgaatttttcataaaatattagaataagtcttgccctatatgtgactcattcaaaagctgaattgtgcatgcaaaacacaaaaat |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017595 |
gactctttcaaaagctgaatttttcataaaatattagaataagtcttgccctatatgtgactcattcaaaagctgaattgtgcatgcaaaacacaaaaat |
43017496 |
T |
|
| Q |
710 |
gatatataagcaacaaacaagaaaaccatttcctcttccaattttcttctattcttggttacatctcctgtgacctctgagataaattcgacttgttatg |
809 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017495 |
gatatataagcaacaaacaagaaaaccatttcctcttccaattttcttctattcttggttacatctcctgtgacctctgagataaattcgacttgttatg |
43017396 |
T |
|
| Q |
810 |
taatctcaggtttatgtgatgatttattattttgaatgtttacttaaattcttcaacactattcaaataagtttacttgatcactctcttattcttgttt |
909 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017395 |
taatctcaggtttatgtgatgatttattattttgaatgtttacttaaattcttcaacactattcaaataagtttacttgatcactctcttattcttgttt |
43017296 |
T |
|
| Q |
910 |
tcaaaggtggagcgaggattgggagggtaaagtttgtagggtttaaagagtagtggaacga-gatttcaaggtgataaggtcaatg-tgttttggtagac |
1007 |
Q |
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| T |
43017295 |
tcaaaggtggagcgaggattgggagggtaaagtttgtagggtttaaagagtagtggaacgaggatttcaaggtgataaggtcaatgttgttttggtagac |
43017196 |
T |
|
| Q |
1008 |
ctcccc-atcata-atattatcatcgaagtattattagtccatgttt--gttcaca-ttagagggagatg-actcgattatgcaggtgtaga--taattg |
1099 |
Q |
| |
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|||||| |||||| || | ||||||| | | ||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
43017195 |
ctccccaatcatatatttaatcatcg--gaagtattagtccatgttttgtttcacatttaga-ggagatgaactcgattatgcaggtgtagaattaattg |
43017099 |
T |
|
| Q |
1100 |
tttc-acatgtaagtgtc-ttgttgtgtccgt |
1129 |
Q |
| |
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|||| |||||| |||||| ||||||||||||| |
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| T |
43017098 |
tttcaacatgttagtgtctttgttgtgtccgt |
43017067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 376 - 665
Target Start/End: Complemental strand, 35057706 - 35057433
Alignment:
| Q |
376 |
aaaataatctattatgaattataggccgnnnnnnntgaaatattctgtttggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaat |
475 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| | | |||||||||||||||||||| ||||| ||||||||||||||||| |||| | |
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| T |
35057706 |
aaaataatctattatgaattataggccgaaaaaaatgaaatattatatctggaattatagcacaaagttctgtttttactatgatcttaatgtcgtgatt |
35057607 |
T |
|
| Q |
476 |
ttagagttattttatttcaaaagttaataaaaa-tcaaggctatccaaaaataattttctttaacgtttaatttttcccaaaatttacaggccttgcctt |
574 |
Q |
| |
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||||||||||||||||||||| ||||||||||| | || || |||||||||| | || ||||||||||||| | ||||||||| |
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| T |
35057606 |
ttagagttattttatttcaaatgttaataaaaaattaacgccatccaaaaatgaagtt-----------------tcccaaaatttactgaccttgcctt |
35057524 |
T |
|
| Q |
575 |
atttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttcataaaatattagaataagtcttgccctatat |
665 |
Q |
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| T |
35057523 |
atttttttcacctcataaacggtttttatgcaagtgactctttcaaaagctgaatttttcataaaatattagaatatgtcttgccctatat |
35057433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 723 - 850
Target Start/End: Complemental strand, 35057230 - 35057106
Alignment:
| Q |
723 |
caaacaagaaaaccatttcctcttccaattttcttctattcttggttacatctcctgtgacctctgagataaattcgacttgttatgtaatctcaggttt |
822 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| ||||||||| || ||||| ||||||||||||||| |
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| T |
35057230 |
caaacaagaaaaccatttcctcttccaattttct---attcttggttacatctccagtgatctctaagataaatttgatttgttctgtaatctcaggttt |
35057134 |
T |
|
| Q |
823 |
atgtgatgatttattattttgaatgttt |
850 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
35057133 |
atgtgatgatttattattttgaatgttt |
35057106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 854 - 913
Target Start/End: Complemental strand, 35057058 - 35056999
Alignment:
| Q |
854 |
taaattcttcaacactattcaaataagtttacttgatcactctcttattcttgttttcaa |
913 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
35057058 |
taaattattcaacactattcaaataagtttacttgatctctctcttatttttgttttcaa |
35056999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 475 - 526
Target Start/End: Complemental strand, 38569809 - 38569757
Alignment:
| Q |
475 |
tttagagttattttatttcaaaagttaat-aaaaatcaaggctatccaaaaat |
526 |
Q |
| |
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||||||||||||||||||||||||||| | ||||| |||||||||||||||| |
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| T |
38569809 |
tttagagttattttatttcaaaagttagtaaaaaaataaggctatccaaaaat |
38569757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 545 - 635
Target Start/End: Original strand, 14328897 - 14328987
Alignment:
| Q |
545 |
atttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttca |
635 |
Q |
| |
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|||||| ||||| ||||| |||||||| |||||||| |||| | |||| | |||||||||||||||| ||||||| | |||||||||| |
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| T |
14328897 |
attttttccaaagtttactaaccttgcctcatttttctgacctaaaaaacagtttttatgcaagtgacttattcaaaatcagaatttttca |
14328987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 545 - 635
Target Start/End: Original strand, 14421907 - 14421997
Alignment:
| Q |
545 |
atttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttca |
635 |
Q |
| |
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|||||| ||||| ||||| |||||||| |||||||| |||| | |||| | |||||||||||||||| ||||||| | |||||||||| |
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| T |
14421907 |
attttttccaaagtttactaaccttgcctcatttttctgacctaaaaaacagtttttatgcaagtgacttattcaaaatcagaatttttca |
14421997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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