View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0995-Insertion-10 (Length: 259)
Name: NF0995-Insertion-10
Description: NF0995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0995-Insertion-10 |
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| [»] chr5 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 43240984 - 43240733
Alignment:
| Q |
8 |
caaccatcgatatactaagttacaaagaccacggtgtccattgaatataatacgggagacatttatttaagataatcgaaaaagccaatgtagatatgat |
107 |
Q |
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| T |
43240984 |
caaccatcgatatactaagttacaaagaccacgatgtccattgaatataatacgggagacatttatttaagatcatcgaaaaagccaatgtagatatgat |
43240885 |
T |
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| Q |
108 |
aaggcatttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctg |
207 |
Q |
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| T |
43240884 |
aaggcatttataatttttgcagccaattcaacaatcatggaatttcctaatgaagtgtagtaatgttgtctagtttacaatcataaaagtgtataatctg |
43240785 |
T |
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| Q |
208 |
acttaataattaatgatggtacaatagagatgaatagccgaaattccgcaag |
259 |
Q |
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| T |
43240784 |
acttaataattaatgatggtacaatagagatgaatagccgaaattccgcaag |
43240733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 38927688 - 38927831
Alignment:
| Q |
113 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
212 |
Q |
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| T |
38927688 |
atttattattgttgcatccaattcaacaatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgactta |
38927785 |
T |
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| Q |
213 |
ataattaatgatggtacaatagagatgaatagccgaaattccgcaag |
259 |
Q |
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| T |
38927786 |
aaaattaatgat-gtacaatagagaaaaatatccgaaattctgcaag |
38927831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 43230225 - 43230152
Alignment:
| Q |
47 |
attgaatataatacgggagacatttatttaagataatcgaaaaagccaatgtagatatgataaggcatttatta |
120 |
Q |
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| T |
43230225 |
attgaatataatgcgggatacatttactcaagatcattgaaaaaaccaatgtagatatgataaggcatttatta |
43230152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 43246929 - 43246892
Alignment:
| Q |
83 |
tcgaaaaagccaatgtagatatgataaggcatttatta |
120 |
Q |
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| T |
43246929 |
tcgaaaaagccaatgtagatatgataaggcatgtatta |
43246892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 43253394 - 43253357
Alignment:
| Q |
83 |
tcgaaaaagccaatgtagatatgataaggcatttatta |
120 |
Q |
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| T |
43253394 |
tcgaaaaagccaatgtagatatgataaggcatgtatta |
43253357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 3570745 - 3570888
Alignment:
| Q |
113 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
212 |
Q |
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| T |
3570745 |
atttattattgttgcatccaattcaacaatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgactta |
3570842 |
T |
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| Q |
213 |
ataattaatgatggtacaatagagatgaatagccgaaattccgcaag |
259 |
Q |
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| T |
3570843 |
aaaattaatgat-gtacaatagagaaaaatatccgaaattctgcaag |
3570888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 46354114 - 46354257
Alignment:
| Q |
113 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
212 |
Q |
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| T |
46354114 |
atttattattgttgcatccaattcaacgatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgattta |
46354211 |
T |
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| Q |
213 |
ataattaatgatggtacaatagagatgaatagccgaaattccgcaag |
259 |
Q |
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| T |
46354212 |
aaaattaatgat-gtacaatagagaaaaatagctgaaattctgcaag |
46354257 |
T |
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