View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0995-Insertion-11 (Length: 204)
Name: NF0995-Insertion-11
Description: NF0995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0995-Insertion-11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 15387305 - 15387501
Alignment:
| Q |
8 |
tttgtttaattttgataacttttgatttgattagtgttttaaaattattcaataaggtaaacggttaattcaaaatcgaaaacttgtgatgattgctttc |
107 |
Q |
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| T |
15387305 |
tttgtttaattttgataacttttgatttgattagtgttttaaaattattcaataaggcaaatggttaattcaaaatcgaaaacttgtgatgattgctttc |
15387404 |
T |
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| Q |
108 |
agggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgcatttactctcgtggtgtttccttgccttcttttagca |
204 |
Q |
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| T |
15387405 |
agggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgcatttactctcgtggtgtttccttgccttcttttagca |
15387501 |
T |
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Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 15395679 - 15395875
Alignment:
| Q |
8 |
tttgtttaattttgataacttttgatttgattagtgttttaaaattattcaataaggtaaacggttaattcaaaatcgaaaacttgtgatgattgctttc |
107 |
Q |
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| T |
15395679 |
tttgtttaattttgataacttttgatttgattagtgttttaaaattattcaataaggaaaaaggttaattcaaaatcgaaaacttgtgatgattgctttc |
15395778 |
T |
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| Q |
108 |
agggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgcatttactctcgtggtgtttccttgccttcttttagca |
204 |
Q |
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| T |
15395779 |
agggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgcatttactctcgtggtgtttccttgccttcttttagca |
15395875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 38667321 - 38667226
Alignment:
| Q |
108 |
agggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgcatttactctcgtggtgtttccttgccttcttttagc |
203 |
Q |
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| T |
38667321 |
agggacggaggctcttttcgccgacctatctcattttccggtctcagctgtacagcttgcatttactctggttgtgtttccctgccttcttttagc |
38667226 |
T |
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