View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0995-Insertion-14 (Length: 145)

Name: NF0995-Insertion-14
Description: NF0995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0995-Insertion-14
NF0995-Insertion-14
[»] chr5 (3 HSPs)
chr5 (7-145)||(35063329-35063467)
chr5 (7-145)||(43024682-43024820)
chr5 (7-144)||(42814336-42814465)
[»] chr4 (1 HSPs)
chr4 (7-67)||(41563190-41563250)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 6e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 35063329 - 35063467
Alignment:
Q  7 attaacactgacgtatttttagaaatcaacatttcttcatcaagatattctgaaattccaaaagataagtcaactataaaacattgtaaatgtgttattt 106  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35063329 attaacactgacgtatttttagaaatcaacatttcttcatcgagatattctgaaattccaaaagataagtcaactataaaacattgtaaatgtgctattt 35063428  T
Q  107 cattaagcctaatataaccactatgatactacaaatttt 145  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  35063429 cattaagcctaatataaccaatatgatactacaaatttt 35063467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 43024682 - 43024820
Alignment:
Q  7 attaacactgacgtatttttagaaatcaacatttcttcatcaagatattctgaaattccaaaagataagtcaactataaaacattgtaaatgtgttattt 106  Q
    ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||| |||||||||| |||||    
T  43024682 attaacactgatgtatttttaggaatcaacatttcttcatcatgatattctgaaattccaaaagacaagccaaatataaaacactgtaaatgtgctattt 43024781  T
Q  107 cattaagcctaatataaccactatgatactacaaatttt 145  Q
    ||| |||||||||||||| ||||||||||||||||||||    
T  43024782 catgaagcctaatataacaactatgatactacaaatttt 43024820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 42814336 - 42814465
Alignment:
Q  7 attaacactgacgtatttttagaaatcaacatttcttcatcaagatattctgaaattccaaaagataagtcaactataaaacattgtaaatgtgttattt 106  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||        || |||||||| |||||||||| |||||    
T  42814336 attaacactgacgtatttttaggaatcaacatttcttcatcatgatattctgaaattccaaaag--------acaataaaacactgtaaatgtgctattt 42814427  T
Q  107 cattaagcctaatataaccactatgatactacaaattt 144  Q
    ||| |||||||||| ||||||||||||| |||||||||    
T  42814428 catgaagcctaataaaaccactatgatagtacaaattt 42814465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 41563250 - 41563190
Alignment:
Q  7 attaacactgacgtatttttagaaatcaacatttcttcatcaagatattctgaaattccaa 67  Q
    ||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  41563250 attaacactgaggtatttttagggatcaacatttcttcatcaagatattctgaaattccaa 41563190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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