View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0995-Insertion-3 (Length: 836)
Name: NF0995-Insertion-3
Description: NF0995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0995-Insertion-3 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 693; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 25 - 836
Target Start/End: Complemental strand, 12747464 - 12746640
Alignment:
| Q |
25 |
gtgagtttatgaatgactcatcactattgctttcataaagtcttagaaattgttgaaataccgacatgaaataaatttcaacaattactagcgttatttg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12747464 |
gtgagtttatgaatgactcatcactattgctttcataaagtcttagaaattgttgaaataccaacatgaaataaatttcaacaattactagcgttatttg |
12747365 |
T |
|
| Q |
125 |
caccacaattactagtgatgacaacatgcttttaacgatgccttttaccaaagaggaatttcgtgcgacgatgttctctttgcaccctcgcaaatgtctt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
12747364 |
caccacaattactagtgatgacaacatgcttttaacaacgccttttaccaaagaggagtttcgtgcgacgttgttctctttgcaccctcacaaatgtctt |
12747265 |
T |
|
| Q |
225 |
gatccggatggttataaaccatgtttttatcattaattttggaatttatgtagtgatgagatattccaagttctaacaatgttgtgcatggttagataca |
324 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12747264 |
gatccggatggttataatccaggtttttatcattaattttgaaatttatgtagtgatgagatattccaagttccaacaatgttgtgcatggttagataca |
12747165 |
T |
|
| Q |
325 |
ggtcaatctctagcttctatcaatatgacaaacattgatctcatccctaaaggcatttctcggactacgatgaaagattgtaagccgatagctttatgta |
424 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12747164 |
ggtcaatctctagcttctattaatatgacaaacattgatctcatccctaaaggcaattctcggactacgatggaagattgtaagccgatagctttatgta |
12747065 |
T |
|
| Q |
425 |
atgttctctataaattgatctctaaggttcttgcaaataagttgaagcttattctcccacagtgaatctctgataatcaatcaacctttgtacctaggag |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12747064 |
atgttctctataaattgatctctaaggttctcgcaaataagttgaagcttattctcccacagtgaatctctgataatcaatcaacctttgtacctaggag |
12746965 |
T |
|
| Q |
525 |
gtcaattcttgataacaccaaggctgcaatagaagtcatccatcacatgaaaacaaagactcgtggtaatgagggatgtgc-------------gacact |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
12746964 |
gtcaattcttgataacaccaaggctgcaatagaagtcatccatcacatgaaaacaaagactcgtggtaatgagggatgtgcgacgctaaaactggacatt |
12746865 |
T |
|
| Q |
612 |
agtaaagcgtatgatcgtatcgactgagattttttgaatgatgatgaaaatgggctttaatgataaatggatacattggatgaatatgtgcgtggtgtca |
711 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12746864 |
agtaaaacgtatgatcgtatcgactgaaattttttgaatgatgatgaaaatgagctttaatgataaatggatacattggatgaatatgtgcgtggtgcca |
12746765 |
T |
|
| Q |
712 |
attgactattctacgttggtcaacaatgaatcggttgggccagttattcctgggaaaggtttgcatcaaggagaccctttgtccacgtatttgttcatta |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12746764 |
attgactattctacgttggtcaacaatgaatcggttgggccagttattcccgggaaaggtttgcatcaaggagaccctttgtccacgtatttgttcatta |
12746665 |
T |
|
| Q |
812 |
tttgtgcagaggccgggttgcccta |
836 |
Q |
| |
|
|||||||||||| ||||| |||||| |
|
|
| T |
12746664 |
tttgtgcagaggtcgggtagcccta |
12746640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 25 - 836
Target Start/End: Complemental strand, 12810548 - 12809724
Alignment:
| Q |
25 |
gtgagtttatgaatgactcatcactattgctttcataaagtcttagaaattgttgaaataccgacatgaaataaatttcaacaattactagcgttatttg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12810548 |
gtgagtttatgaatgactcatcactattgctttcataaagtcttagaaattgttgaaataccaacatgaaataaatttcaacaattactagcgttatttg |
12810449 |
T |
|
| Q |
125 |
caccacaattactagtgatgacaacatgcttttaacgatgccttttaccaaagaggaatttcgtgcgacgatgttctctttgcaccctcgcaaatgtctt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
12810448 |
caccacaattactagtgatgacaacatgcttttaacgacgccttttaccaaagaggagtttcgtgcgacgttgttctctttgcaccctcacaaatgtctt |
12810349 |
T |
|
| Q |
225 |
gatccggatggttataaaccatgtttttatcattaattttggaatttatgtagtgatgagatattccaagttctaacaatgttgtgcatggttagataca |
324 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12810348 |
gatccggatggttataatccaggtttttatcattaattttgaaatttatatagtgatgagatattccaagttccaacaatgttgtgcatggttagataca |
12810249 |
T |
|
| Q |
325 |
ggtcaatctctagcttctatcaatatgacaaacattgatctcatccctaaaggcatttctcggactacgatgaaagattgtaagccgatagctttatgta |
424 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12810248 |
ggtcaatctctagcttctattaatatgacaaacattgatctcatccctaaaggcaattctcggactacgatggaagattgtaagccgatagctttatgta |
12810149 |
T |
|
| Q |
425 |
atgttctctataaattgatctctaaggttcttgcaaataagttgaagcttattctcccacagtgaatctctgataatcaatcaacctttgtacctaggag |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12810148 |
atgttctctataaattgatctctaaggttctcgcaaataagttgaagcttattctcccacagtgaatctctgataatcaatcaacctttgtacctaggag |
12810049 |
T |
|
| Q |
525 |
gtcaattcttgataacaccaaggctgcaatagaagtcatccatcacatgaaaacaaagactcgtggtaatgagggatgtgc-------------gacact |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |
|
|
| T |
12810048 |
gtcaattcttgataacaccaaggctgcaatagaagtcatccatcacatgaaaacaaagactcgtggtaatgagggatgtacgacgctaaaactggacatt |
12809949 |
T |
|
| Q |
612 |
agtaaagcgtatgatcgtatcgactgagattttttgaatgatgatgaaaatgggctttaatgataaatggatacattggatgaatatgtgcgtggtgtca |
711 |
Q |
| |
|
| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12809948 |
aataaagcgtatgattgtatcgactgaaattttttgaatgatgatgaaaatgagctttaatgataaatggatacattggatgaatatgtgcgtggtgcca |
12809849 |
T |
|
| Q |
712 |
attgactattctacgttggtcaacaatgaatcggttgggccagttattcctgggaaaggtttgcatcaaggagaccctttgtccacgtatttgttcatta |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12809848 |
attgactattctacgttggtcaacaatgaatcggttgggccagttattcctgggaaaggtttgcatcaaggagaccctttgtccacgtatttgttcatta |
12809749 |
T |
|
| Q |
812 |
tttgtgcagaggccgggttgcccta |
836 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
12809748 |
tttgtgcagaggccgggtagcccta |
12809724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 652 - 758
Target Start/End: Complemental strand, 17660631 - 17660525
Alignment:
| Q |
652 |
atgatgaaaatgggctttaatgataaatggatacattggatgaatatgtgcgtggtgtcaattgactattctacgttggtcaacaatgaatcggttgggc |
751 |
Q |
| |
|
||||| |||||||||||| |||| |||||||| |||||||||| ||||| ||| ||| | ||||||| | |||||| ||||||||| ||||||| |
|
|
| T |
17660631 |
atgattaaaatgggctttgatgacaaatggattcattggatgagcatgtgtctggagtctgtagactattatgtgttggttaacaatgaagttgttgggc |
17660532 |
T |
|
| Q |
752 |
cagttat |
758 |
Q |
| |
|
||||||| |
|
|
| T |
17660531 |
cagttat |
17660525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 9e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 299 - 823
Target Start/End: Complemental strand, 21977481 - 21976939
Alignment:
| Q |
299 |
aacaatgttgtgcatggttagatacaggtcaatctctagcttctatcaatatgacaaacattgatctcatccctaaaggcatttctcggactacgatgaa |
398 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| || ||||||| | ||| |||||||||||| ||||||||| ||||| | ||||| ||||| ||||| |
|
|
| T |
21977481 |
aacaatgttgtgcatggttcgatacatgtcaacttccagcttctcttaatctgacaaacattgctctcatcccaaaaggtaattctcatactacaatgaa |
21977382 |
T |
|
| Q |
399 |
agattgtaagccgatagctttatgtaatgttctctataaattgatctctaaggttcttgcaaataagttgaagcttattctcccacagtgaatctctgat |
498 |
Q |
| |
|
|||||| | | ||||| |||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
21977381 |
agattgacggtcaatagccctatgtaatgttctctacaaatggatctctaaggttctcgcaaatagattgaagcttattcacccacagtgtatctctgat |
21977282 |
T |
|
| Q |
499 |
aatcaatcaacctttgtacctaggaggtcaattcttgataacaccaaggctgcaatagaagtcatccatcacatgaaaacaaagactcgtggtaatgagg |
598 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||||||||| || || ||||| |
|
|
| T |
21977281 |
aatcagtcagcctttgtacctaggaggtcaattcttgataatgtcatggttacaatagaagtcatccatcacatgaaaacaaagacttgttgttgtgagg |
21977182 |
T |
|
| Q |
599 |
gatgtg------cgacacta-------gtaaagcgtatgatcgtatcgactgagattttttgaa-----tgatgatgaaaatgggctttaatgataaatg |
680 |
Q |
| |
|
| |||| || |||| ||| ||| ||||||||||||||||| || |||||||| ||||| |||||| ||| | |||||||| ||| |
|
|
| T |
21977181 |
ggtgtgtggcattgaaactagatataggtatagcatatgatcgtatcgactgggaatttttgaagcaggtgatgctgaaaaggggttataatgatagatg |
21977082 |
T |
|
| Q |
681 |
gatacattggatgaatatgtgcgtggtgtcaattgactattctacgttggtcaacaatgaatcggttgggccagttattcctgggaaaggtttgcatcaa |
780 |
Q |
| |
|
||||||||| |||| |||||| || ||| |||| || ||| ||||||||||| |||||| || ||||||||||||||||| | |||||||| |||| |
|
|
| T |
21977081 |
gatacattgaatgagtatgtgtgttaagtcggttgattactctgcgttggtcaactatgaattagtggggccagttattcctggaagaggtttgcgtcaa |
21976982 |
T |
|
| Q |
781 |
ggagaccctttgtccacgtatttgttcattatttgtgcagagg |
823 |
Q |
| |
|
| ||||||||| ||| ||||||| |||||||||||||| |||| |
|
|
| T |
21976981 |
gtagaccctttatccccgtattttttcattatttgtgcggagg |
21976939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 657 - 823
Target Start/End: Complemental strand, 24410636 - 24410470
Alignment:
| Q |
657 |
gaaaatgggctttaatgataaatggatacattggatgaatatgtgcgtggtgtcaattgactattctacgttggtcaacaatgaatcggttgggccagtt |
756 |
Q |
| |
|
||||||| | |||||||||| ||||||||| ||||||| ||| ||||||| ||| ||||||| |||| |||||||||||||||||| | | || |||| |
|
|
| T |
24410636 |
gaaaatgagttttaatgatagatggatacaatggatgagtatctgcgtggagtcggttgactactctatgttggtcaacaatgaatcagctaggttagtt |
24410537 |
T |
|
| Q |
757 |
attcctgggaaaggtttgcatcaaggagaccctttgtccacgtatttgttcattatttgtgcagagg |
823 |
Q |
| |
|
|||| || | |||||| | ||||||| | ||||| |||||||||||||||||||||| |||| |
|
|
| T |
24410536 |
attcttgtgcgaggtttatgttaaggagagtcgatgtccccgtatttgttcattatttgtgcggagg |
24410470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 652 - 758
Target Start/End: Original strand, 14688171 - 14688277
Alignment:
| Q |
652 |
atgatgaaaatgggctttaatgataaatggatacattggatgaatatgtgcgtggtgtcaattgactattctacgttggtcaacaatgaatcggttgggc |
751 |
Q |
| |
|
||||| |||||||||||| |||| |||||||| |||||||||| ||||| ||| ||| | ||||||| | |||||| ||||||||| ||||||| |
|
|
| T |
14688171 |
atgattaaaatgggctttgatgacaaatggatccattggatgagcatgtgtttggagtctgtagactattatgtgttggttaacaatgaagttgttgggc |
14688270 |
T |
|
| Q |
752 |
cagttat |
758 |
Q |
| |
|
||||||| |
|
|
| T |
14688271 |
cagttat |
14688277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University