View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0995-Insertion-8 (Length: 327)
Name: NF0995-Insertion-8
Description: NF0995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0995-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 27051861 - 27052179
Alignment:
| Q |
8 |
aaatccacagtgaaccacagtcacttgaagaatcccgccttgacatgttatcacgtattctcggaaggtttcgctttaaattattgttctttttcaatga |
107 |
Q |
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| T |
27051861 |
aaatccacagtgacccacagtcacttgaagaatcccaccttgacatgctatcacctattctcggaaggtttcactttaaattattgttctttttcaatga |
27051960 |
T |
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| Q |
108 |
acttgtttctttatacatgaaattgttggtgtgtcaagtgtgagtacgaagtcccacttttgatgaaaaagtcgacgtggtgtccaaatcatccatgtgg |
207 |
Q |
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| T |
27051961 |
acttgtttctttatacatgaaattgttggtgtgtcaagtgtgagtacgaagtcccacgtttgatgaaaaagtcgacgtggtgtccaaatcatccatgtgg |
27052060 |
T |
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| Q |
208 |
ttgctaagcccgatgtgatccctagatctttcaacctcttaggttcccttgcgacccaacaacaaaagcaaacatatttggaattttcaacatgagtatg |
307 |
Q |
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| T |
27052061 |
ttgctaagcccgatgtgatccctagatctttcaacctcttaggttcccttgcgacccaacaacaaaagcaaacatatttagaattttcaacatgagtatg |
27052160 |
T |
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| Q |
308 |
gagtagtacccttgcatat |
326 |
Q |
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| T |
27052161 |
gagtagtacccttgcatat |
27052179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 4539093 - 4539045
Alignment:
| Q |
131 |
tgttggtgtgtcaagtgtgagtacgaagtcccacttttgatgaaaaagt |
179 |
Q |
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| T |
4539093 |
tgttggtgtgtcaagtgtgagttagaagtcccacattggatgaagaagt |
4539045 |
T |
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