View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0995-Insertion-9 (Length: 323)
Name: NF0995-Insertion-9
Description: NF0995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0995-Insertion-9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 29230528 - 29230213
Alignment:
| Q |
7 |
aatgaagttattgggttttatacatgattatgtttttgggttttaacagagataaaagtgtgattacgaatctgaatggggtatcttcaatttggaagac |
106 |
Q |
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| T |
29230528 |
aatgaaattattgggttttatacatgattatgtttttgggttttaacagagataaaagtgtgattacgaatctgaatggggtatcttcaatttggaagac |
29230429 |
T |
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| Q |
107 |
atggtgttaggcagattattagatttaaagatgctgttaatgttaatgatagtgttgtggtgaaccgactcatgtatgcatctcaaggattgcgttacaa |
206 |
Q |
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| T |
29230428 |
atggtgttaggcagattattagatttaaagatgctgttaatgttaatgatagtgttgtggtgaaccgactcatgtatgcatctcaaggattgcgttacaa |
29230329 |
T |
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| Q |
207 |
caggaagcttcaagtcattcttacaactgtaagtatctatctcacggttttaaattgcgggccgcggcaacggctgtagtggtgagaactacagttaaat |
306 |
Q |
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| T |
29230328 |
caggaagcttcaagtcattcttacaactgtaagtatctatctcagggttttaaattgc-ggccgcggtaatggctgcagtggtgagaactacagttaaat |
29230230 |
T |
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| Q |
307 |
gccgtgttatgttgtga |
323 |
Q |
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| T |
29230229 |
gccgtgttatgttgtga |
29230213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 73 - 273
Target Start/End: Complemental strand, 16929227 - 16929033
Alignment:
| Q |
73 |
cgaatctgaatggggtatcttcaatttggaagacatggtgttaggcagattattagatttaaagatgctgttaatgttaatgatagtgttgtggtgaacc |
172 |
Q |
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| T |
16929227 |
cgaatcagaatggggtatcttcaatttggaagatatagtgttaggcagattgttagatttaaagatg-tg-----gttaatgagggtgttgtggtgaacc |
16929134 |
T |
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| Q |
173 |
gactcatgtatgcatctcaaggattgcgttacaacaggaagcttcaagtcattcttacaactgtaagtatctatctcacggttttaaattgcgggccgcg |
272 |
Q |
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| T |
16929133 |
cactcatgtatgcatctcaaggattgcgttacaatcggaagcttcaagttattcttacaactgtaagtatctatcttagggttttaaattgggggccgcg |
16929034 |
T |
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