View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0996_low_1 (Length: 588)

Name: NF0996_low_1
Description: NF0996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0996_low_1
NF0996_low_1
[»] chr2 (1 HSPs)
chr2 (3-110)||(24169568-24169677)
[»] chr7 (3 HSPs)
chr7 (490-577)||(14206188-14206275)
chr7 (490-577)||(14214878-14214965)
chr7 (3-91)||(11583737-11583827)
[»] chr8 (1 HSPs)
chr8 (492-577)||(21317363-21317448)
[»] chr3 (1 HSPs)
chr3 (494-577)||(4714078-4714161)
[»] scaffold0520 (1 HSPs)
scaffold0520 (466-524)||(6016-6074)
[»] chr1 (4 HSPs)
chr1 (416-497)||(21979799-21979880)
chr1 (416-497)||(21982017-21982098)
chr1 (466-499)||(22822703-22822736)
chr1 (478-522)||(21217093-21217137)
[»] chr5 (1 HSPs)
chr5 (416-493)||(23988201-23988279)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 24169568 - 24169677
Alignment:
Q  3 ctcaaaatgcttccattcaagatatgtg--agtcaattcaaaagtggaatgatcttggggtgaacgccgatatcttttatgcctcatcttgtcctaaaaa 100  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||    
T  24169568 ctcaaaatgcttccattcaagatatgcgggagtcaattcaaaagtggaatgatcttggggtgaaccccgatatcttttatgccttaccttgtcctaaaaa 24169667  T
Q  101 taccacaccg 110  Q
    ||||||||||    
T  24169668 taccacaccg 24169677  T

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Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 490 - 577
Target Start/End: Complemental strand, 14206275 - 14206188
Alignment:
Q  490 attgaagccttcagttatagtattgatgatgttagacgttttgattacatctactttatagtcactgcttgtttgttttgatgatgtc 577  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  14206275 attgaagccttaagttatagttttgatgatgttagacgttttgattacatctactttatagtcactatttgtttgttttaatgatgtc 14206188  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 490 - 577
Target Start/End: Complemental strand, 14214965 - 14214878
Alignment:
Q  490 attgaagccttcagttatagtattgatgatgttagacgttttgattacatctactttatagtcactgcttgtttgttttgatgatgtc 577  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  14214965 attgaagccttaagttatagttttgatgatgttagacgttttgattacatctactttatagtcactatttgtttgttttaatgatgtc 14214878  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 11583827 - 11583737
Alignment:
Q  3 ctcaaaatgcttccattcaagatatgtg--agtcaattcaaaagtggaatgatcttggggtgaacgccgatatcttttatgcctcatcttg 91  Q
    |||||||||| ||||||||||||||| |  |||| |||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||||    
T  11583827 ctcaaaatgcatccattcaagatatgcgggagtccattcaaaagtggaatgatcttggggtgaacaccgataccttttttgcctcaccttg 11583737  T

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Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 492 - 577
Target Start/End: Original strand, 21317363 - 21317448
Alignment:
Q  492 tgaagccttcagttatagtattgatgatgttagacgttttgattacatctactttatagtcactgcttgtttgttttgatgatgtc 577  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  21317363 tgaagcctttagttatagttttgatgatgttagacgttttgattacatctactttatagtcactatttgtttgttttaatgatgtc 21317448  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 494 - 577
Target Start/End: Original strand, 4714078 - 4714161
Alignment:
Q  494 aagccttcagttatagtattgatgatgttagacgttttgattacatctactttatagtcactgcttgtttgttttgatgatgtc 577  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||  ||||||||    
T  4714078 aagccttcagttatagttttgatgatgttagacgttttgattacatctactttatagtcattgtttgttagtttaaatgatgtc 4714161  T

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Target: scaffold0520 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 466 - 524
Target Start/End: Original strand, 6016 - 6074
Alignment:
Q  466 tttgacattatcaaaaagggggagattgaagccttcagttatagtattgatgatgttag 524  Q
    |||||||| ||||||||| ||||||||||||||| ||| |||||| |||||||||||||    
T  6016 tttgacatcatcaaaaagagggagattgaagcctccagctatagttttgatgatgttag 6074  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 21979799 - 21979880
Alignment:
Q  416 tgtcttgtatgctaagtttcagggggagaagctaatcatcaacagagggctttgacattatcaaaaagggggagattgaagc 497  Q
    |||||||||||| |||||| |||||||| |  ||||||||||||    | |||||||| ||| |||||||||||||||||||    
T  21979799 tgtcttgtatgccaagttttagggggagcaaataatcatcaacatgatgttttgacatcatcgaaaagggggagattgaagc 21979880  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 21982017 - 21982098
Alignment:
Q  416 tgtcttgtatgctaagtttcagggggagaagctaatcatcaacagagggctttgacattatcaaaaagggggagattgaagc 497  Q
    |||||||||||| |||||| |||||||| |  ||||||||||||    | |||||||| ||| ||||||||||||| |||||    
T  21982017 tgtcttgtatgccaagttttagggggagcaaataatcatcaacatgatgttttgacatcatcgaaaagggggagatcgaagc 21982098  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 499
Target Start/End: Complemental strand, 22822736 - 22822703
Alignment:
Q  466 tttgacattatcaaaaagggggagattgaagcct 499  Q
    |||||||| |||||||||||||||||||||||||    
T  22822736 tttgacatcatcaaaaagggggagattgaagcct 22822703  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 522
Target Start/End: Original strand, 21217093 - 21217137
Alignment:
Q  478 aaaaagggggagattgaagccttcagttatagtattgatgatgtt 522  Q
    ||||||||||||||||||||||  || |||||| |||||||||||    
T  21217093 aaaaagggggagattgaagcctctagctatagttttgatgatgtt 21217137  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 23988279 - 23988201
Alignment:
Q  416 tgtcttgtatgctaagtttcagggggagaagctaatcatcaacagag-ggctttgacattatcaaaaagggggagattg 493  Q
    ||||||||||||||||||||| |||||| |  | ||| |||||| || || |||||||| ||||||||| |||||||||    
T  23988279 tgtcttgtatgctaagtttcacggggagcaaattatcgtcaacatagtgggtttgacatcatcaaaaagagggagattg 23988201  T

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