View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0997_low_2 (Length: 253)
Name: NF0997_low_2
Description: NF0997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0997_low_2 |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 9172181 - 9172347
Alignment:
| Q |
28 |
caccaccacctatgaatttgcatcttgaagtgattcaggaaatagattaaatagtttgattgtataaataaatttttattgtcaatgtcttgtcatgttt |
127 |
Q |
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| T |
9172181 |
caccaccacctatgaatttgcatcttgaagtgattcaggaaatagattaaatagtttgattgtataaataaatttttattgtcaatgtcttgtcatgttt |
9172280 |
T |
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| Q |
128 |
tagtaaagtgcttaattttggtttgtaaaattaggaatatatatatgtagagagcatatactatgagaatg |
198 |
Q |
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| T |
9172281 |
tagtaaagtgcttaattttggtttgtaaaattaggaatatatatat----agaacatatactatgagaatg |
9172347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 9173749 - 9173701
Alignment:
| Q |
169 |
tatatgtagagagcatatactatgagaatgacattcttatatgagaatg |
217 |
Q |
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| T |
9173749 |
tatatatatagaacatatactatgagaatgacattcttacatgagaatg |
9173701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 28844927 - 28844838
Alignment:
| Q |
164 |
atatatatatgtagagagcatatactatgagaatgacattcttatatgagaatgaattacagccatcagattaaaataaagagatgagat |
253 |
Q |
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| T |
28844927 |
atatatatatatagaggacatatcatatgagaatgacattcttatatgagaatgaattacagccatcagattaaaataaagggttgagat |
28844838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 18101494 - 18101442
Alignment:
| Q |
166 |
atatatatgtagagagcatatactatgagaatgacattcttatatgagaatga |
218 |
Q |
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| T |
18101494 |
atatatatatagagaacatatcttatgagaatgacatctttatatgagaatga |
18101442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 29406841 - 29406885
Alignment:
| Q |
209 |
atgagaatgaattacagccatcagattaaaataaagagatgagat |
253 |
Q |
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| T |
29406841 |
atgagaatgaattacagccatcagattaaaataaagggatgagat |
29406885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 45517340 - 45517389
Alignment:
| Q |
190 |
atgagaatgacattcttatatgagaatgaattacagccatcagattaaaa |
239 |
Q |
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| T |
45517340 |
atgagaatgtcatttttatatgagaatgaataagagccatcaaattaaaa |
45517389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 31238941 - 31238897
Alignment:
| Q |
209 |
atgagaatgaattacagccatcagattaaaataaagagatgagat |
253 |
Q |
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| T |
31238941 |
atgagaatgaattacaaccatcagattaaaataaagggatgagat |
31238897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 31238995 - 31238941
Alignment:
| Q |
164 |
atatatatatgtagagagcatatactatgagaatgacattcttatatgagaatga |
218 |
Q |
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| T |
31238995 |
atatatatatatatataacatatcatatgagaatgacattcttatatgagaatga |
31238941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 34607123 - 34607167
Alignment:
| Q |
209 |
atgagaatgaattacagccatcagattaaaataaagagatgagat |
253 |
Q |
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| T |
34607123 |
atgagaatgaattacagccatcaaattaaaataaagggatgagat |
34607167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 1994791 - 1994843
Alignment:
| Q |
166 |
atatatatgtagagagcatatactatgagaatgacattcttatatgagaatga |
218 |
Q |
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| T |
1994791 |
atatatatatagaggacatatactatgagaatgccatttttatatgagaatga |
1994843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 30164205 - 30164152
Alignment:
| Q |
191 |
tgagaatgacattcttatatgagaatgaattacagccatc-agattaaaataaa |
243 |
Q |
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| T |
30164205 |
tgagaatgacatacttatatgagaatgaatctcagccatcaagatcaaaataaa |
30164152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 1995559 - 1995523
Alignment:
| Q |
182 |
catatactatgagaatgacattcttatatgagaatga |
218 |
Q |
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| T |
1995559 |
catatactatgagaatgtcatttttatatgagaatga |
1995523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 1283317 - 1283371
Alignment:
| Q |
164 |
atatatatatgtagagagcatatactatgagaatgacattcttatatgagaatga |
218 |
Q |
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|||| ||||| |||||| ||||||||||||||||||| | |||||||||||||| |
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| T |
1283317 |
atatctatatatagagaacatatactatgagaatgactattttatatgagaatga |
1283371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 8744314 - 8744260
Alignment:
| Q |
164 |
atatatatatgtagagagcatatactatgagaatgacattcttatatgagaatga |
218 |
Q |
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|||||||||| || || |||||| | |||||||||||||||||||||||||||| |
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| T |
8744314 |
atatatatatatatagggcatatcatgtgagaatgacattcttatatgagaatga |
8744260 |
T |
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