View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0997_low_3 (Length: 249)

Name: NF0997_low_3
Description: NF0997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0997_low_3
NF0997_low_3
[»] chr8 (1 HSPs)
chr8 (1-242)||(39853774-39854015)
[»] scaffold0002 (2 HSPs)
scaffold0002 (147-242)||(466105-466201)
scaffold0002 (38-99)||(465982-466043)
[»] chr5 (2 HSPs)
chr5 (147-242)||(35896719-35896815)
chr5 (38-99)||(35896877-35896938)
[»] chr3 (4 HSPs)
chr3 (147-242)||(52055514-52055610)
chr3 (147-242)||(53575124-53575220)
chr3 (38-99)||(52055391-52055452)
chr3 (38-99)||(53575001-53575062)
[»] chr2 (3 HSPs)
chr2 (147-242)||(26028681-26028777)
chr2 (147-242)||(30200269-30200365)
chr2 (38-99)||(30200146-30200207)
[»] chr1 (4 HSPs)
chr1 (147-242)||(31354257-31354353)
chr1 (147-242)||(16991544-16991640)
chr1 (38-99)||(16991702-16991763)
chr1 (38-99)||(31354415-31354476)
[»] chr4 (2 HSPs)
chr4 (168-235)||(11189318-11189386)
chr4 (163-242)||(20274762-20274842)
[»] chr7 (2 HSPs)
chr7 (147-235)||(6638994-6639083)
chr7 (48-94)||(6639152-6639198)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 39853774 - 39854015
Alignment:
Q  1 taccatacacgtacttcttaaaatctatcaaaatgtgagattcacccttcattaaactgcctaagtgcttgatgctattttgcatcaagtgccaagtacc 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39853774 taccgtacacgtacttcttaaaatctatcaaaatgtgagattcacctttcattaaactgccaaagtgcttgatgctattttgcatcaagtgccaagtacc 39853873  T
Q  101 aaggctatggtaagtttttggcacaacctcaacaagtgcttttgccatcagtaaaaactatctgaggcattttttgtttatgtgcctctaaaatgtctca 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39853874 aaggccatggtaagtttttggcacaacctcaacaagtgcttttgccatcagtaaaaactatttgaggcattttttgtttatgtgcctctaaaatgtctca 39853973  T
Q  201 aatagccacttgtaagactcaactgtttcatcatagaataat 242  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  39853974 aatagccacttgtaagactcaactgtttcatcatataataat 39854015  T

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Target: scaffold0002 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 466105 - 466201
Alignment:
Q  147 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatagaataat 242  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||||||||||| ||| |||||| | ||||| ||||| ||||||    
T  466105 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcagcagtttcgtcatataataat 466201  T

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Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 465982 - 466043
Alignment:
Q  38 agattcacccttcattaaactgcctaagtgcttgatgctattttgcatcaagtgccaagtac 99  Q
    |||||| |||||||||||| | |||||||| || || | |||||||||||||||||| ||||    
T  465982 agattcccccttcattaaatttcctaagtgtttaattccattttgcatcaagtgccacgtac 466043  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 35896815 - 35896719
Alignment:
Q  147 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatagaataat 242  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||||||||||| ||| |||||| | ||||| ||||| ||||||    
T  35896815 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcagcagtttcgtcatataataat 35896719  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 35896938 - 35896877
Alignment:
Q  38 agattcacccttcattaaactgcctaagtgcttgatgctattttgcatcaagtgccaagtac 99  Q
    |||||| |||||||||||| | |||||||| || || | |||||||||||||||||| ||||    
T  35896938 agattcccccttcattaaatttcctaagtgtttaattccattttgcatcaagtgccacgtac 35896877  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 52055514 - 52055610
Alignment:
Q  147 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatagaataat 242  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||||||||||| ||| |||||| | ||||| ||||| ||||||    
T  52055514 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcagcagtttcgtcatataataat 52055610  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 53575124 - 53575220
Alignment:
Q  147 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatagaataat 242  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||||||||||| ||| |||||  | ||||| ||||| ||||||    
T  53575124 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcggcagtttcgtcatataataat 53575220  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 52055391 - 52055452
Alignment:
Q  38 agattcacccttcattaaactgcctaagtgcttgatgctattttgcatcaagtgccaagtac 99  Q
    |||||| |||||||||||| | |||||||| || || | |||||||||||||||||| ||||    
T  52055391 agattcccccttcattaaatttcctaagtgtttaattccattttgcatcaagtgccacgtac 52055452  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 53575001 - 53575062
Alignment:
Q  38 agattcacccttcattaaactgcctaagtgcttgatgctattttgcatcaagtgccaagtac 99  Q
    |||||| |||||||||||| | |||||||| || || | |||||||||||||||||| ||||    
T  53575001 agattcccccttcattaaatttcctaagtgtttaattccattttgcatcaagtgccacgtac 53575062  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 26028681 - 26028777
Alignment:
Q  147 atcagtaaaaactatctgaggcattttttgtttatgtgcctctaaaa-tgtctcaaatagccacttgtaagactcaactgtttcatcatagaataat 242  Q
    ||||||||||||  | ||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||| |||||   |||||||||||| ||||||    
T  26028681 atcagtaaaaacagtttgaggcattttctgtttgtgtgcctctaaaaatgtctcaaaaagccacttgtatgactcttttgtttcatcatataataat 26028777  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 30200269 - 30200365
Alignment:
Q  147 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatagaataat 242  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||||||||||| ||| |||||  | ||||| ||||| ||||||    
T  30200269 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcggcagtttcgtcatataataat 30200365  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 30200146 - 30200207
Alignment:
Q  38 agattcacccttcattaaactgcctaagtgcttgatgctattttgcatcaagtgccaagtac 99  Q
    |||||| |||||||||||| | |||||||| || || | |||||||||||||||||| ||||    
T  30200146 agattcccccttcattaaatttcctaagtgtttaattccattttgcatcaagtgccacgtac 30200207  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 31354353 - 31354257
Alignment:
Q  147 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatagaataat 242  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||||||||||| ||| |||||| | ||||| ||||| ||||||    
T  31354353 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcagcagtttcgtcatataataat 31354257  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 16991640 - 16991544
Alignment:
Q  147 atcagtaaaaactatctgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatagaataat 242  Q
    ||||||||||||| | ||||||||||| || |||||||| |||| |||||||||||| ||||||| ||| |||||| | ||||| ||||| ||||||    
T  16991640 atcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaagagccactcgtatgactcagcagtttcgtcatataataat 16991544  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 16991763 - 16991702
Alignment:
Q  38 agattcacccttcattaaactgcctaagtgcttgatgctattttgcatcaagtgccaagtac 99  Q
    |||||| |||||||||||| | |||||||| || || | |||||||||||||||||| ||||    
T  16991763 agattcccccttcattaaatttcctaagtgtttaattccattttgcatcaagtgccacgtac 16991702  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 31354476 - 31354415
Alignment:
Q  38 agattcacccttcattaaactgcctaagtgcttgatgctattttgcatcaagtgccaagtac 99  Q
    |||||| |||||||||||| | |||||||| || || | |||||||||||||||||| ||||    
T  31354476 agattcccccttcattaaatttcctaagtgtttaattccattttgcatcaagtgccacgtac 31354415  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 11189386 - 11189318
Alignment:
Q  168 cattttttgtttatgtgcctctaaaa-tgtctcaaatagccacttgtaagactcaactgtttcatcata 235  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||| || ||| |||||||||||||    
T  11189386 cattttttgttgatgtgcctctaaaaatgtctcaaagagccacttgtatgattcagctgtttcatcata 11189318  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 20274842 - 20274762
Alignment:
Q  163 tgaggcattttttgtttatgtgcctcta-aaatgtctcaaatagccacttgtaagactcaactgtttcatcatagaataat 242  Q
    ||||||||||| || |||||||| |||| |||||||||||| |||||||  || |||||| | ||||| ||||| ||||||    
T  20274842 tgaggcattttctgcttatgtgcttctagaaatgtctcaaagagccactcatatgactcagcagtttcgtcatataataat 20274762  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 6639083 - 6638994
Alignment:
Q  147 atcagtaaaaactatctgaggcattttttgtttatgtgcctct-aaaatgtctcaaatagccacttgtaagactcaactgtttcatcata 235  Q
    ||||||||||||| | ||||||||||| || ||||| |||||| ||||||||||| | ||||| ||||||| ||||  |||||| |||||    
T  6639083 atcagtaaaaactgtttgaggcattttctgcttatgagcctctaaaaatgtctcagagagccatttgtaagtctcagatgtttcgtcata 6638994  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 6639198 - 6639152
Alignment:
Q  48 ttcattaaactgcctaagtgcttgatgctattttgcatcaagtgcca 94  Q
    ||||||||| | | |||||||||||||| ||||||||||||||||||    
T  6639198 ttcattaaattacataagtgcttgatgccattttgcatcaagtgcca 6639152  T

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