View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0998_low_1 (Length: 502)
Name: NF0998_low_1
Description: NF0998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0998_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 95 - 502
Target Start/End: Original strand, 33531514 - 33531921
Alignment:
| Q |
95 |
gggagttcccgagtttgaaccccgattgaaacaacttttggtccaacttaacttatctcccatccgaactccagattaccagggtcacttcccctcttaa |
194 |
Q |
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| T |
33531514 |
gggagttcccgagtttgaaccccgattgaaataacttttggtccgacttaacttatctcccatccgaactccagattaccagggtcacttcccctcttaa |
33531613 |
T |
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| Q |
195 |
ttcagaggattaagacaggtatactatttaattgagtgaagcatattaagttattcatcattaacaagtacctgaagtatattgtcgccaaacggctatg |
294 |
Q |
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| T |
33531614 |
ttcagaggattaagaaaggtatactatttaattgagtgaagcatattaagttattcatcattaacaagtacctgaagtatattgtcgccaaacggctatg |
33531713 |
T |
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| Q |
295 |
agctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaaccttcccaaaccaatcaaagcagcactcttgttacaa |
394 |
Q |
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| T |
33531714 |
agctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaaccttcccaaaccaatcaaagcagcactcttgttacaa |
33531813 |
T |
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| Q |
395 |
tgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctcagaaaatcttccttgtttgtatgcttcatttcccattgatt |
494 |
Q |
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| T |
33531814 |
tgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctcagaaaatcttccttgtttgtatgcttcatttcccattgatt |
33531913 |
T |
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| Q |
495 |
ttaacacc |
502 |
Q |
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| T |
33531914 |
tcaacacc |
33531921 |
T |
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Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 262 - 501
Target Start/End: Original strand, 26209619 - 26209858
Alignment:
| Q |
262 |
gtacctgaagtatattgtcgccaaacggctatgagctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaacctt |
361 |
Q |
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||||||||| |||||||| |||||||| | |||||||| ||||||||| || | || ||||| |||||||||||||| |||||| | ||||||||| |
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| T |
26209619 |
gtacctgaaatatattgttgccaaacgattgtgagctctgttataagaaggatccaaccgaatagattcctcacactcaataattgcttcttgaaacctt |
26209718 |
T |
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| Q |
362 |
cccaaaccaatcaaagcagcactcttgttacaatgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctcagaaaatc |
461 |
Q |
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| T |
26209719 |
cctaatccaatcaaagcagcactcttattgcaatgataagttgccttatttgaatcaatagcaattgctttgtcatacaaagccaaagcctcttcaaact |
26209818 |
T |
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| Q |
462 |
ttccttgtttgtatgcttcatttcccattgattttaacac |
501 |
Q |
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| T |
26209819 |
taccctttttgtatgcttcatttcccattgatttcaacac |
26209858 |
T |
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