View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-1 (Length: 631)
Name: NF0999-INSERTION-1
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-1 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 414 - 631
Target Start/End: Original strand, 36496687 - 36496906
Alignment:
| Q |
414 |
gtctttgtaacatacaaaaatatttgttagtgtttctaaaatttgatgtatttttgactttggtgatctcaaatccaatgatcaaaaacttagaacttac |
513 |
Q |
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| T |
36496687 |
gtctttgtaacatacaaaaatatttgttagtgtttctaaaatttgatgtatttttgactttgatgatctcaaatccaatgatcaaaaacttagaacttac |
36496786 |
T |
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| Q |
514 |
atcgtc--ccatcgtgggtcatgacttttcaaatgtctaatgattataaagttttaccaataacaaccttcctaggacctttccaccattgttctaagag |
611 |
Q |
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| T |
36496787 |
atcgtcgaccatcgtgagtcatgacttttcaaatgtctaatgattataaagttctaccaatgacaaccttcctaggacctttccaccattgttctaagag |
36496886 |
T |
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| Q |
612 |
gcttgcacccacacctataa |
631 |
Q |
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| T |
36496887 |
gcttgcacccacacctataa |
36496906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 36496073 - 36496144
Alignment:
| Q |
212 |
actgtctgttttgctcctcttcgattctaactatgactttgtgaaacttattgatgataggtataagttata |
283 |
Q |
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| T |
36496073 |
actgtctgttttgctcctcttcgattctaactatgactttgtgaaacttattgatgataggtataagttata |
36496144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 36496558 - 36496623
Alignment:
| Q |
285 |
tattattagtagtagaaagggatgatagaatttcatattcattagggttaggaggaaattgaaaat |
350 |
Q |
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| T |
36496558 |
tattattagtaataggaagggatgatagaatttcatattcattagggttaggaggaaattgaaaat |
36496623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 36509421 - 36509562
Alignment:
| Q |
21 |
cagcatcgcctacttcattaccaatctgttacactaccttgttttcttcccaaaagccgctcacttcgtcgttcctcagttagccagtcttttcgtcctc |
120 |
Q |
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| T |
36509421 |
cagcatcgcttacttcgtaaccgatctattacactacgtcgttttcttcccaagcgacgttctcttcatcgctcatcatttagccacgcttttcgttatc |
36509520 |
T |
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| Q |
121 |
ttcacgtgccgtcacgtcgtatctcatggcgctttctacgtc |
162 |
Q |
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| T |
36509521 |
gtcacgtgtcgtcacgtcgtttctcatggctctttctccgtc |
36509562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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