View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0999-INSERTION-10 (Length: 786)
Name: NF0999-INSERTION-10
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 196 - 784
Target Start/End: Original strand, 8953952 - 8954547
Alignment:
| Q |
196 |
aaaactataaaactattgaaattagtatcagagggaatcgaacatgagatttttagagaacgtactctaaaattttaaatcaatcactagaccacaccca |
295 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||| ||||| ||||||||||| |||| ||||| ||| | ||| |
|
|
| T |
8953952 |
aaaactataaaactatcgaaattagtattagagggaatcgaacatgaaatttttagacaacatactcaaaaattttaaaccaatgactaggccaaagcca |
8954051 |
T |
|
| Q |
296 |
aatgagtgatataattagatttaatgatgcataggctttatgtggctcgtttannnnnnngtctttacatggaacaaacaaaaagtgacatgtatatatc |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8954052 |
aatgagtgatataattagatttaatgatgcataggctttatgtggctcgtttatttttttgtctttacatggaacaaacaaaaagtgacatgtatatatc |
8954151 |
T |
|
| Q |
396 |
gatatcatcatagattaatcagccatatttatac-----caattatcatcttatacaacactttattattannnnnnnncttctgttaagtaaacaaagg |
490 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
8954152 |
gatatcatcattgattaatcagccatatttatacatagccaattatcatcttatacaacactttattaattttttttttcttatgttaagtaaacaaagg |
8954251 |
T |
|
| Q |
491 |
aacgaaaataatgaagaaggttgttccatgaatgcattgtcatgctctctctctcacacacacaaatgctcatctttgtaattagctaactggctgggg- |
589 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8954252 |
aacgaaaataatgaagaaagttgttccatgaatgcattgtcatgctctctttctcacacaca--aatgctcatctttgtaattagctaactggctggggg |
8954349 |
T |
|
| Q |
590 |
tgtattagttggaaattaaaatgccaacttatatattgtttctatgctaaataattcgtatttttatattgtaacaacaaattaaggagtttattacaag |
689 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8954350 |
tgtattagttggaaattaaaatgccaacttatatattgtttctatgctaaataattcgtatttttatattgtaacaacaaattaaggagtttattacaag |
8954449 |
T |
|
| Q |
690 |
taaaaaattcaaatgatgataacactcaaaatagcttgttttgttaactaaacg--tatatacctcatgtacttg-ttttgttaaccaaacgtatctt |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8954450 |
taaaaaattcaaatgatgataacactcaaaatagcttgttttgttaaccaaacgtatatatacctcatgtacttgtttttgttaaccaaacgtatctt |
8954547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 8953617 - 8953804
Alignment:
| Q |
7 |
acatacacattacaacatcgatcgtacgtaatatgtgttcactaatgnnnnnnntgtgccttcttcaacttgcttcactagcaa--------taagaaca |
98 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8953617 |
acatccacattacaacatcgatcgtacgtaatatgtgttcactaatgaagaaaatgtgccttcttcaacttgcttcactagcaagtagcaattaagaaca |
8953716 |
T |
|
| Q |
99 |
aattataaccacaacttggggtcctcatttttgtctctattcatttaaattgcccaaccatgctcgataatgacataattagatttta |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8953717 |
aattataaccacaacttggggtcctcatttttgtctctattcacttaaattgtccaaccatgctcgataatgacataattagatttta |
8953804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University