View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0999-INSERTION-11 (Length: 717)
Name: NF0999-INSERTION-11
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 672; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 8 - 714
Target Start/End: Original strand, 46894664 - 46895371
Alignment:
| Q |
8 |
ggttgttgttggtggcgagatgagactaaaaggaaagagcaaaagagagaaatgagtagaaaatgaaggatggaaatagaagccatgttggtgtgtatag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894664 |
ggttgttgttggtggcgagatgagactaaaaggaaagagcaaaagagagaaatgagtagaaaatgaaggatggaaatagaagccatgttggtgtgtatag |
46894763 |
T |
|
| Q |
108 |
aaagatgtgttgagttgatcaagttagtgaattacactatatatagagagggaccgtttttaataagcggcagagattgtgacattattttggaagtgtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894764 |
aaagatgtgttgagttgatcaagttagtgaattacactatatatagagagggaccgtttttaataagcggcagagattgtgacattattttggaagtgtt |
46894863 |
T |
|
| Q |
208 |
tgatggttatgaatttccagaataatgttgggatggattgatgaacttgagattaataagaaaacaaactggtggtgagtgtgaggggttgagggttact |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894864 |
tgatggttatgaatttccagaataatgttgggatggattgatgaacttgagattaataagaaaacaaactggtggtgagtgtgaggggttgagggttact |
46894963 |
T |
|
| Q |
308 |
tggcagctaagaggaaaagcttagttgcatggtgtgcagttttcatttgttttatgtaatgtaaaggaaacgtgtggagtttgtgcatttttgcatcggg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894964 |
tggcagctaagaggaaaagcttagttgcatggtgtgcagttttcatttgttttatgtaatgtaaaggaaacgtgtggagtttgtgcatttttgcatcggg |
46895063 |
T |
|
| Q |
408 |
atccttggatgtactgtatcaatcattgtccctgacacattgttttgagacaattctgaatcagcaagctgtagtttgtattaacacacaac-aagttca |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46895064 |
atccttggatgtactgtatcaatcattgtccctgacacattgttttgagacaattctgaatcagcaagctgtagtttgtattaacacacaactaagttca |
46895163 |
T |
|
| Q |
507 |
aaaatcaaaataaagggaatgtcataaataagatcgtatacatacgggtacgctagtacgagaaacaagaacatataatcaattatatcaatccgatcgc |
606 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46895164 |
aaaatcaaaatagagggaatgtcataaataagatcgtatacatacgggtacgttagtacgagaaacgagaacatataatcaattatatcaatccgatcgc |
46895263 |
T |
|
| Q |
607 |
aattcattaaaattaatagttgtgatatatttttaattaaaagacgtcggtgatctaaaattaatgattttgttgagatctataccatccggtcttgatt |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
46895264 |
aattcattaaaattaatagttgtgatatatttttaattaaaagacgtcggtgatctaaaattaatggttttgttgagatctacaccgtccgatcttgatt |
46895363 |
T |
|
| Q |
707 |
gaacggtc |
714 |
Q |
| |
|
|||||||| |
|
|
| T |
46895364 |
gaacggtc |
46895371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University