View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-12 (Length: 212)
Name: NF0999-INSERTION-12
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 47836264 - 47836465
Alignment:
| Q |
7 |
acaatagacaatatgaggaggcattaaagatgttagagttagagaagaagaagaaactagcagatactgaaattttggcggccaagtttttgaagaaagg |
106 |
Q |
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| T |
47836264 |
acaatagacaatatgaggaggcattaaagatgttagagttagagaa---gaagaaactaacagatgctgaaattttggcggccaagtttttgaagaaagg |
47836360 |
T |
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| Q |
107 |
tgattggtggaatgattcaattgacaatatgagtagtgaagagcttaaacaatttatggtgtccatttttgaggattaagggtgtgtaattgaacataat |
206 |
Q |
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| T |
47836361 |
tgattggtggaatgattcaattgacaatatgagtagtgaagtgcttgaacaatttatggtgtcca-ttttgaggattaagggtgtgtaattgaacataat |
47836459 |
T |
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| Q |
207 |
ttatat |
212 |
Q |
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|||||| |
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| T |
47836460 |
ttatat |
47836465 |
T |
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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 45394119 - 45393958
Alignment:
| Q |
7 |
acaatagacaatatgaggaggcattaaagatgttagagttagagaagaagaagaaactagcagatactgaaattttggcggccaagtttttgaagaaagg |
106 |
Q |
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| T |
45394119 |
acaatagacaatatgaggaggcacaaaagatgttggag--acggaa-aagaagaaactagaagatgttcaaaatttggct---aagattttcaacaaggg |
45394026 |
T |
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| Q |
107 |
tgattggtggaatgattcaattgacaatatgagtagtgaagagcttaaacaatttatggtgtccattt |
174 |
Q |
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| T |
45394025 |
tgactggtggaatgattcaattgatgatatgagtagtgatcagcttgaacaatttatggtgtccattt |
45393958 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 9668251 - 9668181
Alignment:
| Q |
95 |
tttgaagaaaggtgattggtggaatgattcaattgacaatatgagtagtgaagagcttaaacaatttatgg |
165 |
Q |
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| T |
9668251 |
tttgaacaaaagcgattggtggaatgattccattgatgatatgagtattgaagagcttgaacaatttatgg |
9668181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 9668321 - 9668270
Alignment:
| Q |
7 |
acaatagacaatatgaggaggcattaaagatgttagagttagagaagaagaa |
58 |
Q |
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| T |
9668321 |
acaatagacgatatgaggaggcattaaaaatgttggagtcggagaagaagaa |
9668270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 13539275 - 13539205
Alignment:
| Q |
95 |
tttgaagaaaggtgattggtggaatgattcaattgacaatatgagtagtgaagagcttaaacaatttatgg |
165 |
Q |
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| T |
13539275 |
tttgaacaaaagcgattggtggaatgattccattgatgatatgagtattgaagagcttgaacaatttatgg |
13539205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 13539345 - 13539294
Alignment:
| Q |
7 |
acaatagacaatatgaggaggcattaaagatgttagagttagagaagaagaa |
58 |
Q |
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||||||||| |||||||||||||||||| ||||| |||| ||||||||||| |
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| T |
13539345 |
acaatagacgatatgaggaggcattaaaaatgttggagtcggagaagaagaa |
13539294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 52740601 - 52740534
Alignment:
| Q |
112 |
ggtggaatgattcaattgacaatatgagtagtgaagagcttaaacaatttatggtgtccatttttgag |
179 |
Q |
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| T |
52740601 |
ggtggaatgattcaattgatgatatgagtagtgatcaacttgaacaatttatgatatccatttatgag |
52740534 |
T |
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