View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0999-INSERTION-13 (Length: 362)

Name: NF0999-INSERTION-13
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0999-INSERTION-13
NF0999-INSERTION-13
[»] chr1 (7 HSPs)
chr1 (118-362)||(7607911-7608155)
chr1 (118-362)||(31770899-31771143)
chr1 (30-123)||(7608224-7608317)
chr1 (30-123)||(31771212-31771305)
chr1 (8-98)||(7608318-7608408)
chr1 (8-94)||(31771310-31771396)
chr1 (280-317)||(14184848-14184885)
[»] scaffold0003 (3 HSPs)
scaffold0003 (159-289)||(36664-36794)
scaffold0003 (159-280)||(42852-42976)
scaffold0003 (121-160)||(36837-36876)
[»] chr4 (1 HSPs)
chr4 (280-362)||(41810334-41810416)
[»] chr6 (1 HSPs)
chr6 (159-280)||(27444385-27444509)
[»] chr3 (12 HSPs)
chr3 (190-285)||(31688156-31688252)
chr3 (190-289)||(31896611-31896711)
chr3 (190-289)||(31912320-31912420)
chr3 (190-289)||(31945968-31946068)
chr3 (303-362)||(52130955-52131014)
chr3 (121-161)||(31688056-31688096)
chr3 (320-362)||(53689436-53689478)
chr3 (121-161)||(31896771-31896811)
chr3 (121-161)||(31912480-31912520)
chr3 (222-261)||(952782-952821)
chr3 (311-356)||(52311493-52311539)
chr3 (121-161)||(31946128-31946168)
[»] chr7 (2 HSPs)
chr7 (317-362)||(1971305-1971350)
chr7 (311-362)||(37362435-37362487)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 118 - 362
Target Start/End: Complemental strand, 7608155 - 7607911
Alignment:
Q  118 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctctcgacgattcctcattttcttcaaaaacaca--a 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||  |    
T  7608155 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctct--acgattcctcatcttcttcaaaaacacacaa 7608058  T
Q  216 aatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcggaaaactgatgttattatcacacctctcc 315  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  7608057 aatcctttcttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgtgtcggaaaactgctgttattatcacacctctcc 7607958  T
Q  316 attattgttcaatacccatgcaaactctacagtgccccatgcttccc 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7607957 attattgttcaatacccatgcaaactctacagtgccccatgcttccc 7607911  T

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Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 118 - 362
Target Start/End: Complemental strand, 31771143 - 31770899
Alignment:
Q  118 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctctcgacgattcctcattttcttcaaaaacaca--a 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||||  |    
T  31771143 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctcttcatctctct--acgattcctcatcttcttcaaaaacacacaa 31771046  T
Q  216 aatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcggaaaactgatgttattatcacacctctcc 315  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31771045 aatcatttcttcttcttctgccttcatttcgaccttctaaagtaaatgcatcatcgttgaccaccgcgttggaaaactgatgttattatcacacctctcc 31770946  T
Q  316 attattgttcaatacccatgcaaactctacagtgccccatgcttccc 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31770945 attattgttcaatacccatgcaaactctacagtgccccatgcttccc 31770899  T

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Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 7608317 - 7608224
Alignment:
Q  30 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttatgtgacaaaattaattgtatt 123  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7608317 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 7608224  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 31771305 - 31771212
Alignment:
Q  30 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttatgtgacaaaattaattgtatt 123  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  31771305 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccagtttttcctcctttcttacgtgacaaaattaattgtatt 31771212  T

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Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 7608408 - 7608318
Alignment:
Q  8 caaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctccttt 98  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  7608408 caaataacactcccaaccctaattctcctgttttaggcgccaacaaatctcagcccttggatctaatctgtttgcaattttttcctccttt 7608318  T

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Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 31771396 - 31771310
Alignment:
Q  8 caaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctc 94  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31771396 caaataacactcccaaccctaattctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgcaattttttcctc 31771310  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 14184848 - 14184885
Alignment:
Q  280 cgcgtcggaaaactgatgttattatcacacctctccat 317  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  14184848 cgcgtaggaaaactgatgttattatcacacctctccat 14184885  T

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Target: scaffold0003 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 159 - 289
Target Start/End: Complemental strand, 36794 - 36664
Alignment:
Q  159 taaccctcctttctctccatctctctcgacgattcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaa 256  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||  |||||| || ||||||||||||||||||||||||||||||||    
T  36794 taaccctcctttctctccatctctct--acgattcctcatcttcttcaaaaacacacaaaatccctttttcttcttctgccttcatttcgaccctctaaa 36697  T
Q  257 gtaaatgcatcatcgttgaccaccgcgtcggaa 289  Q
    ||||||||||||||||||| |||||||| ||||    
T  36696 gtaaatgcatcatcgttgatcaccgcgttggaa 36664  T

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Target: scaffold0003; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 159 - 280
Target Start/End: Complemental strand, 42976 - 42852
Alignment:
Q  159 taaccctcctttctctccatctctctcgacgattcctcattttcttcaaaaacaca--aaatcctttcttcttcttct---gccttcatttcgaccctct 253  Q
    ||||||||||||||||||||||||||  |||||||||| | |||||||||||||||  |||||| |||||||||||||   |||||||||||||||||||    
T  42976 taaccctcctttctctccatctctct--acgattcctcgtcttcttcaaaaacacacaaaatcccttcttcttcttcttctgccttcatttcgaccctct 42879  T
Q  254 aaagtaaatgcatcatcgttgaccacc 280  Q
    |||||||||||||||||||||||||||    
T  42878 aaagtaaatgcatcatcgttgaccacc 42852  T

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Target: scaffold0003; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 36876 - 36837
Alignment:
Q  121 attgtaaatgacaaataattaatgttattggtttccaata 160  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  36876 attgtaaatgacaaataattaatgttatcggtttccaata 36837  T

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Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 41810334 - 41810416
Alignment:
Q  280 cgcgtcggaaaactgatgttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccc 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41810334 cgcgtcggaaaactgatgttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccc 41810416  T

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Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 159 - 280
Target Start/End: Original strand, 27444385 - 27444509
Alignment:
Q  159 taaccctcctttctctccatctctctcgacgattcctcattttcttcaaaaacaca--aaatcctttct---tcttcttctgccttcatttcgaccctct 253  Q
    ||||||||||||||||||||||||||  |||||||||| | |||||||||||||||  |||||| ||||   ||||||||||||||||||||||||||||    
T  27444385 taaccctcctttctctccatctctct--acgattcctcgtcttcttcaaaaacacacaaaatcccttcttcttcttcttctgccttcatttcgaccctct 27444482  T
Q  254 aaagtaaatgcatcatcgttgaccacc 280  Q
    |||||||||||||||||||||||||||    
T  27444483 aaagtaaatgcatcatcgttgaccacc 27444509  T

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Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 31688156 - 31688252
Alignment:
Q  190 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtc 285  Q
    ||||||||| |||||||||||||||  |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31688156 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtc 31688252  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 190 - 289
Target Start/End: Complemental strand, 31896711 - 31896611
Alignment:
Q  190 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 287  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31896711 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31896613  T
Q  288 aa 289  Q
    ||    
T  31896612 aa 31896611  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 190 - 289
Target Start/End: Complemental strand, 31912420 - 31912320
Alignment:
Q  190 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 287  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31912420 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31912322  T
Q  288 aa 289  Q
    ||    
T  31912321 aa 31912320  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 190 - 289
Target Start/End: Complemental strand, 31946068 - 31945968
Alignment:
Q  190 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 287  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31946068 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31945970  T
Q  288 aa 289  Q
    ||    
T  31945969 aa 31945968  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 52130955 - 52131014
Alignment:
Q  303 atcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccc 362  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52130955 atcacacctctccattattgttcaataccgatgcaaactctacagtgccccatgcttccc 52131014  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 31688056 - 31688096
Alignment:
Q  121 attgtaaatgacaaataattaatgttattggtttccaataa 161  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31688056 attgtaaatgacaaataattaatgttatcggtttccaataa 31688096  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 53689436 - 53689478
Alignment:
Q  320 ttgttcaatacccatgcaaactctacagtgccccatgcttccc 362  Q
    |||||||||||| ||||||||||||||| ||||||||||||||    
T  53689436 ttgttcaataccgatgcaaactctacagagccccatgcttccc 53689478  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 31896811 - 31896771
Alignment:
Q  121 attgtaaatgacaaataattaatgttattggtttccaataa 161  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  31896811 attgtaaatgacaaataattaatgttatcgatttccaataa 31896771  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 31912520 - 31912480
Alignment:
Q  121 attgtaaatgacaaataattaatgttattggtttccaataa 161  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  31912520 attgtaaatgacaaataattaatgttatcgatttccaataa 31912480  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 952821 - 952782
Alignment:
Q  222 ttcttcttcttctgccttcatttcgaccctctaaagtaaa 261  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  952821 ttcttcttcttctgccttcatttcaatcctctaaagtaaa 952782  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 52311539 - 52311493
Alignment:
Q  311 tctccattatt-gttcaatacccatgcaaactctacagtgccccatg 356  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  52311539 tctccattatttgttcaataccgatgcaaactctacagagccccatg 52311493  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 31946168 - 31946128
Alignment:
Q  121 attgtaaatgacaaataattaatgttattggtttccaataa 161  Q
    ||||||||||||||||||| |||||||| | ||||||||||    
T  31946168 attgtaaatgacaaataatgaatgttatcgatttccaataa 31946128  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 1971305 - 1971350
Alignment:
Q  317 ttattgttcaatacccatgcaaactctacagtgccccatgcttccc 362  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  1971305 ttattgttcaataccaatgcaaactctacagagccccatgcttccc 1971350  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 37362487 - 37362435
Alignment:
Q  311 tctccattatt-gttcaatacccatgcaaactctacagtgccccatgcttccc 362  Q
    ||||||||||| |||||||||  ||||||||||||||| ||||||||||||||    
T  37362487 tctccattatttgttcaatactgatgcaaactctacagagccccatgcttccc 37362435  T

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