View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-15 (Length: 245)
Name: NF0999-INSERTION-15
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 79 - 245
Target Start/End: Complemental strand, 16964805 - 16964636
Alignment:
| Q |
79 |
ctgctctatgcttctccactccatttctcattgaataacacaacaatacaccaagaacaacacatcatcccaacaatccagcaataaatcatcgatgtta |
178 |
Q |
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| T |
16964805 |
ctgctctattcttctacactccatttctcattgaataacacaacaatacaccaagaacaacacagcatcccaacaatccagcaacaaatcatcgatgtta |
16964706 |
T |
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| Q |
179 |
atcca---acaacaacaaattcaaaaaattctttatcaaaccttcatcccttcatctcaaacccatttct |
245 |
Q |
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| T |
16964705 |
atccaacgacaacaacaaatccagaaaattctttatcaaaccttcatcacttcatctcaaacccatttct |
16964636 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 7347316 - 7347356
Alignment:
| Q |
201 |
aaattctttatcaaaccttcatcccttcatctcaaacccat |
241 |
Q |
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| T |
7347316 |
aaattctttagcaaaacttcatcccttcgtctcaaacccat |
7347356 |
T |
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