View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-17 (Length: 181)
Name: NF0999-INSERTION-17
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-17 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 25731 - 25905
Alignment:
| Q |
7 |
accaacaaccctctctgtgcttgcctcagtttccttgcctccaactattcttgctagtccaaaatctgagattttcggttgcatctcctcgtctagaaga |
106 |
Q |
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| T |
25731 |
accaacaactctctctgtgcttgcctcagtttctttccctccaactattcttgctagtccaaaatctgagattttcggttgcatctcctcgtctagaaga |
25830 |
T |
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| Q |
107 |
atgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagca |
181 |
Q |
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| T |
25831 |
atgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagca |
25905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 5e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 5e-73
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 21917898 - 21918068
Alignment:
| Q |
7 |
accaacaaccctctctgtgcttgcctcagtttccttgcctccaactattcttgctagtccaaaatctgagattttcggttgcatctcctcgtctagaaga |
106 |
Q |
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| T |
21917898 |
accaacaaccctctctgtgcttgcctctgtttctttgcctgcaaatgttcttgctattccaaaatctgagatttttggttgcatctcctcatctagaaga |
21917997 |
T |
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| Q |
107 |
atgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacg |
177 |
Q |
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| T |
21917998 |
atgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacg |
21918068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 3102504 - 3102383
Alignment:
| Q |
44 |
cctccaactattcttgctagtccaaaatctgagattttcggttgcatctcctcgtctagaagaatgttgctagttttcaaatctcggtgaataactctaa |
143 |
Q |
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| T |
3102504 |
cctccaaatgttcttgcaagtccaaaatctgagatttttggattcatttcttgatctaatagaatattgctagctttcaggtctctgtgaataactctga |
3102405 |
T |
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| Q |
144 |
gtcttgagtcttgatgaagata |
165 |
Q |
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| T |
3102404 |
gcctagagtcctcatgaagata |
3102383 |
T |
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Target: chr8 (Bit Score: 28; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 19526593 - 19526660
Alignment:
| Q |
101 |
agaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagag |
168 |
Q |
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| T |
19526593 |
agaagtatgttgctagctttcaagtctctgtgaataattttgagtcttgagtacttatgaagatagag |
19526660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 19537487 - 19537554
Alignment:
| Q |
101 |
agaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagag |
168 |
Q |
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| T |
19537487 |
agaagtatgttgctagctttcaagtctctgtgaataattttgagtcttgagtacttatgaagatagag |
19537554 |
T |
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