View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0999-INSERTION-18 (Length: 192)
Name: NF0999-INSERTION-18
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-18 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 31795666 - 31795565
Alignment:
| Q |
91 |
atacaaagtgtgttgtgagattatatcggtggttgaagagcttcttgtcaacatgcaagttgcaccaaaagtttttcgcctaattttcgacatacgaata |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
31795666 |
atacaaagtgtgttgtgagattatatcggtggttgaagagcttcttgtcaacatgcaagttgcaccaaaagtttttcgtctgattttcgacatacgaata |
31795567 |
T |
|
| Q |
191 |
tt |
192 |
Q |
| |
|
|| |
|
|
| T |
31795566 |
tt |
31795565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 31795791 - 31795697
Alignment:
| Q |
7 |
agtttgggctggagaaaatggatggaagaatcaattttggcttttgtattttcaattcaaggatgtgttgatacaatcaagattatacaaagtgt |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
31795791 |
agtttgggttggagaaaatggatggaagaatcaattttggcttttgtattttcaactcaaggatgtgttgatacaatcaagattacacaaggtgt |
31795697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 22189869 - 22189810
Alignment:
| Q |
94 |
caaagtgtgttgtgagattatatcggtggttgaagagcttcttgtcaacatgcaagttgc |
153 |
Q |
| |
|
||||||||||| ||| ||||| | | ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
22189869 |
caaagtgtgttatgatattatgttgatggttgaagagcttcctgtcaacatggaagttgc |
22189810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 10149858 - 10149946
Alignment:
| Q |
94 |
caaagtgtgttgtgagattatatcggtggttgaagagcttcttgtcaacatgcaagttgcaccaaaagtttttcgcctaattttcgaca |
182 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||||| |||| | | |||| |||||| |||| ||||||||| ||| |||||||||| |
|
|
| T |
10149858 |
caaattgtgttatgagattatgtcggtggttgaagaacttccggcccacataaaagttgtaccataagtttttcacctgattttcgaca |
10149946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 1604934 - 1604845
Alignment:
| Q |
7 |
agtttgggctggagaaaatggatggaagaatcaattttggcttttgtat-tttcaattcaaggatgtgttgatacaatcaagattataca |
95 |
Q |
| |
|
|||||||||| ||||||| || |||||||| ||||||| ||| || | |||||| ||||||| | ||| ||||||||||||||||||| |
|
|
| T |
1604934 |
agtttgggctatagaaaattgaaggaagaatgaattttgacttgtggaaatttcaagtcaaggacgggttaatacaatcaagattataca |
1604845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 4034238 - 4034177
Alignment:
| Q |
104 |
tgtgagattatatcggtggttgaagagcttcttgtcaacatgcaagttgcaccaaaagtttt |
165 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | ||||||| ||| ||||||| ||||||| |
|
|
| T |
4034238 |
tgtgagattatatcggtggttgaagaactttctaccaacatggaagctgcaccataagtttt |
4034177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 4529185 - 4529275
Alignment:
| Q |
9 |
tttgggctggagaaaatggatggaagaatcaattttggcttttgt---attttcaattcaaggatgtgttgatacaatcaagattatacaa |
96 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||||||| ||| ||| ||||||| ||| |||||| | ||| |||||| |||||||||| |
|
|
| T |
4529185 |
tttgggctagagaaaattggtggaagaatcaattttgccttgtgtggagttttcaagtcatggatgtttcgatccaatcacgattatacaa |
4529275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 21932359 - 21932285
Alignment:
| Q |
94 |
caaagtgtgttgtgagattatat--cggtggttgaaga-gcttcttgtcaacatgcaagttgcaccaaaagtttt |
165 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| |||||||| ||||||| ||||||||| | ||||||| |
|
|
| T |
21932359 |
caaagtgtgttgtgagattatgttagtgtggttgaagaggcttcttgccaacatggaagttgcacaataagtttt |
21932285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University