View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-2 (Length: 761)
Name: NF0999-INSERTION-2
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-2 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 284 - 584
Target Start/End: Original strand, 51873113 - 51873413
Alignment:
| Q |
284 |
ccgtgtaataaatgcaaaacattgagtaattcatcgtagaatttgttaagcatataaaataaattcctccaatcaaattttcttcatacgcacaaaatat |
383 |
Q |
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| T |
51873113 |
ccgtgtaataaatgcaaaacattgagtaattcatcgtagaatttgttgagcatataaaataaatttctccaatcaaattttcttcatacgcacaaaatat |
51873212 |
T |
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| Q |
384 |
aaaactcataactattatttaatttagatttagatcagatatccgagtccattgccactcataccaacgacaaaattcctttatattatttaatttagat |
483 |
Q |
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| T |
51873213 |
aaaactcataactattatttaatttagatttagatcaaatatccgagtccattaccactcataccaactacaaaattcctttatattatttaatttagat |
51873312 |
T |
|
| Q |
484 |
gtccgagatttataccacatacaactaactacatgctggtaaaactaattatagagaaaataataacggtctttttaattgagaaatgatatttgaacaa |
583 |
Q |
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| T |
51873313 |
gtccgagatttatacagcatacaactaactacatgctggtaaaactaattataaagaaaataataacggtctttttaattgagaaatgatatttgaacaa |
51873412 |
T |
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| Q |
584 |
c |
584 |
Q |
| |
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| T |
51873413 |
c |
51873413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 51872830 - 51873055
Alignment:
| Q |
7 |
aacttgtttctgatttccacacccagaacccatagctaattggaaacctctgcatt-----agtttttgttttatcagattccattctcaaattcttctc |
101 |
Q |
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| T |
51872830 |
aacttgtttctgatttccacacccaaaaaccatagctaattggaaacctctgcattacattagtttttgttttatcagattccattctcaaattgttctc |
51872929 |
T |
|
| Q |
102 |
cactttttcaataaaaaatagtaataatatgctctttcaattttgagagaaagcgaaagccggttgcctcccataacttccataaggcatttcttccatt |
201 |
Q |
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| T |
51872930 |
cactttttcaataaaaaatagtaataatatgctctttcaattttgagagaaagcgaaagccggttgcctcccataacttccataaggcatttcttccatt |
51873029 |
T |
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| Q |
202 |
caacttgttccttccatttatttcac |
227 |
Q |
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| T |
51873030 |
caacttgttccttccatttatttcac |
51873055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 723 - 761
Target Start/End: Original strand, 51873545 - 51873582
Alignment:
| Q |
723 |
ataaaatgatgggtttaaataacattgatattctaattt |
761 |
Q |
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| T |
51873545 |
ataaaatgatgg-tttaaataacattgatattctaattt |
51873582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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