View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0999-INSERTION-22 (Length: 307)

Name: NF0999-INSERTION-22
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0999-INSERTION-22
NF0999-INSERTION-22
[»] chr3 (2 HSPs)
chr3 (170-307)||(9213206-9213346)
chr3 (7-115)||(9213043-9213151)
[»] chr4 (11 HSPs)
chr4 (7-86)||(25160727-25160806)
chr4 (181-258)||(25160529-25160606)
chr4 (7-86)||(25180927-25181006)
chr4 (174-260)||(25189714-25189800)
chr4 (202-262)||(25169061-25169121)
chr4 (202-262)||(25252133-25252193)
chr4 (177-260)||(24986672-24986755)
chr4 (7-73)||(25169152-25169218)
chr4 (7-73)||(25252036-25252102)
chr4 (199-260)||(25018067-25018128)
chr4 (177-260)||(25047095-25047178)
[»] chr2 (3 HSPs)
chr2 (174-258)||(42167691-42167775)
chr2 (174-258)||(42290144-42290228)
chr2 (174-258)||(42157196-42157280)
[»] chr6 (2 HSPs)
chr6 (16-84)||(29405643-29405711)
chr6 (177-243)||(29460417-29460483)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 9213206 - 9213346
Alignment:
Q  170 ccataatagaaggaaagcttagtggtggcataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggtaa---gatctt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  9213206 ccataatagaaggaaagcttagtggtggcataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggtaagatgatctt 9213305  T
Q  267 gagattcaatgtttatttcattttgactatattaccctata 307  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9213306 gagattcaatgtttatttcattttgactatattaccctata 9213346  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 9213043 - 9213151
Alignment:
Q  7 agatgttaggatcatcaaggatatgaacttggattcttacagattctccttatcctggtctagaatattgccaagtaagtttcatgatgataaattacta 106  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9213043 agatgttaggatcatcaaggacatgaacttggattcatacagattctccttatcctggtctagaatattgccaagtaagtttcatgttgataaattacta 9213142  T
Q  107 ttctccact 115  Q
    |||||||||    
T  9213143 ttctccact 9213151  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 25160806 - 25160727
Alignment:
Q  7 agatgttaggatcatcaaggatatgaacttggattcttacagattctccttatcctggtctagaatattgccaagtaagt 86  Q
    |||||||| |||||| || ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  25160806 agatgttaagatcatgaaagatatgaacttagattcatacagattctccatatcctggtctagaatattgccaagtaagt 25160727  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 25160606 - 25160529
Alignment:
Q  181 ggaaagcttagtggtggcataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggt 258  Q
    |||||||||||||||||  | |||||||||||||||||||||||||| ||| |||||||||||||| | |||||||||    
T  25160606 ggaaagcttagtggtggtgtcaatcaagaaggaatcaactattacaataatctcatcaatgagttactagctaatggt 25160529  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 25181006 - 25180927
Alignment:
Q  7 agatgttaggatcatcaaggatatgaacttggattcttacagattctccttatcctggtctagaatattgccaagtaagt 86  Q
    ||||||| | ||||| |||||||||||||||||| | |||||||| ||| |||| |||||||||||| | ||||||||||    
T  25181006 agatgttggtatcatgaaggatatgaacttggatgcatacagattttccatatcttggtctagaatactcccaagtaagt 25180927  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 260
Target Start/End: Complemental strand, 25189800 - 25189714
Alignment:
Q  174 aatagaaggaaagcttagtggtggcataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggtaa 260  Q
    |||||| |||||| | ||||| ||||||||||  ||||||||||| |||||||||||  ||||||| ||  ||||||||||||||||    
T  25189800 aatagagggaaagttgagtggaggcataaatcgtgaaggaatcaaatattacaacaacctcatcaacgaactattggctaatggtaa 25189714  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 25169121 - 25169061
Alignment:
Q  202 aatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggtaaga 262  Q
    ||||||||||||||| |||||||||||||  |||||||||||||  |||| ||||||||||    
T  25169121 aatcaagaaggaatcgactattacaacaacctcatcaatgagttggtggcaaatggtaaga 25169061  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 25252133 - 25252193
Alignment:
Q  202 aatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggtaaga 262  Q
    ||||||||||||||| |||||||||||||  |||||||||||||  |||| ||||||||||    
T  25252133 aatcaagaaggaatcgactattacaacaacctcatcaatgagttggtggcaaatggtaaga 25252193  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 24986755 - 24986672
Alignment:
Q  177 agaaggaaagcttagtggtggcataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggtaa 260  Q
    |||||||||||||||||| ||  |||| ||||| ||||| ||||| ||||||||  ||||| ||||  ||||||||||||||||    
T  24986755 agaaggaaagcttagtggaggtgtaaaccaagagggaataaactactacaacaacctcatcgatgaactattggctaatggtaa 24986672  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 25169218 - 25169152
Alignment:
Q  7 agatgttaggatcatcaaggatatgaacttggattcttacagattctccttatcctggtctagaata 73  Q
    ||||||| | ||||| |||||||||||||||||| | |||||||| ||| |||| ||||||||||||    
T  25169218 agatgttggtatcatgaaggatatgaacttggatgcatacagattttccatatcttggtctagaata 25169152  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 25252036 - 25252102
Alignment:
Q  7 agatgttaggatcatcaaggatatgaacttggattcttacagattctccttatcctggtctagaata 73  Q
    ||||||| | ||||| |||||||||||||||||| | |||||||| ||| |||| ||||||||||||    
T  25252036 agatgttggtatcatgaaggatatgaacttggatgcatacagattttccatatcttggtctagaata 25252102  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 25018128 - 25018067
Alignment:
Q  199 ataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggtaa 260  Q
    |||||||||||||||||||| |||||||||||| | ||||||||| || | | |||||||||    
T  25018128 ataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggtaa 25018067  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 25047178 - 25047095
Alignment:
Q  177 agaaggaaagcttagtggtggcataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggtaa 260  Q
    |||||||||||||||||| ||  |||| || | |||||| ||||| ||||||||  ||||| ||||  ||||||||||||||||    
T  25047178 agaaggaaagcttagtggaggtgtaaaccatggaggaataaactactacaacaacctcatcgatgaactattggctaatggtaa 25047095  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 42167775 - 42167691
Alignment:
Q  174 aatagaaggaaagcttagtggtggcataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggt 258  Q
    |||||||||||||||||  || || ||||| |||||||||||||| |||||||||||  |||||||||| || ||| ||||||||    
T  42167775 aatagaaggaaagcttaagggaggtataaaccaagaaggaatcaaatattacaacaacctcatcaatgaattgttgactaatggt 42167691  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 42290144 - 42290228
Alignment:
Q  174 aatagaaggaaagcttagtggtggcataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggt 258  Q
    ||||||||||||  ||| ||| || ||||| ||||||||| |||| |||||||||||  ||||||||||||| ||||||||||||    
T  42290144 aatagaaggaaaaattaatggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatgagttgttggctaatggt 42290228  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 42157280 - 42157196
Alignment:
Q  174 aatagaaggaaagcttagtggtggcataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggt 258  Q
    |||||||||||| |||| ||| || ||||| ||||||||| |||| |||||||||||  |||||||||| || ||||| ||||||    
T  42157280 aatagaaggaaaacttaatggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatgaattgttggccaatggt 42157196  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 29405643 - 29405711
Alignment:
Q  16 gatcatcaaggatatgaacttggattcttacagattctccttatcctggtctagaatattgccaagtaa 84  Q
    |||||| ||||| |||||| ||||| |||||||||||||  | || ||||| |||||||||||||||||    
T  29405643 gatcatgaaggacatgaacatggatgcttacagattctcaatctcttggtcaagaatattgccaagtaa 29405711  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 29460483 - 29460417
Alignment:
Q  177 agaaggaaagcttagtggtggcataaatcaagaaggaatcaactattacaacaatttcatcaatgag 243  Q
    ||||||||||||| |||| || |||||  | ||||||||||| |||||||||||  |||||||||||    
T  29460483 agaaggaaagcttggtggaggtataaacaaggaaggaatcaattattacaacaacctcatcaatgag 29460417  T

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