View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0999-INSERTION-24 (Length: 451)
Name: NF0999-INSERTION-24
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 8006742 - 8007063
Alignment:
| Q |
8 |
agtcactgacataaaaatggaaatttctaattaagaaatgaaattacttctcttttgatggctggatgtaataaacagcatctaatgatggtaatggttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8006742 |
agtcactgacataaaaatggaaatttctaattaagaaatgaaattacttctcttttgatggctggatgtaataaacagcatctaatgatggtaatggttg |
8006841 |
T |
|
| Q |
108 |
ccttctacggaaaaggtcttccaccactgcaattagaggtcttacatcaaatttttaacagcataaccacagaacttgtaatgcagaaaagttagctcat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8006842 |
ccttctacggaaaaggtcttccaccactgcaattagaggtcttacatcaaatttttaacagcataaccacagaacttgtaatgcagaaaagttagctcat |
8006941 |
T |
|
| Q |
208 |
tgcatatcaggcgtaaacgttaaaaaacaggaaacagaagaaagcatctcatttatggtcaatattcaaagataagaataactaccatcacgtgtaacac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8006942 |
tgcatatcaggcgtaaacgttaaaaaacaggaaacagaagaaagcatctcatttatggtcaatattcaaagacaagaataactaccatcacgtgtaacac |
8007041 |
T |
|
| Q |
308 |
gataatacaggttaatgaatga |
329 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8007042 |
gataatacaggttaatgaatga |
8007063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 331 - 451
Target Start/End: Original strand, 8007313 - 8007433
Alignment:
| Q |
331 |
aaaaataaataaacttagaaaagccatatccttttagagttcttacaagaaacttcttggtctgtaatatctgccattttacatgaatgtgacataactt |
430 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8007313 |
aaaaataaataaacttagaaaagtcatatccttttagagttcttacaagaaacttcttggtctgtaatatctgccattttacatgaatgtgacataactt |
8007412 |
T |
|
| Q |
431 |
tcaccgtaactttgtccatta |
451 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8007413 |
tcaccgtaactttgtccatta |
8007433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University