View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-25 (Length: 417)
Name: NF0999-INSERTION-25
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-25 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 12224103 - 12224506
Alignment:
| Q |
19 |
tatatagcatgcaaagtagttgatggaagaatggagacatgctcaagttattcgctcaagcggtgcaactccctctacttctgatccacatggaccatct |
118 |
Q |
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| T |
12224103 |
tatatagcgtgcaaagtatttgatggaaga-tggagacgtgctcaagttattcgctcaggtggtgaaactccctttacttctgatccacatgggccgtct |
12224201 |
T |
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| Q |
119 |
cttatagcttctcaccgatgggcaaaaatgggcccttggaaggtataaatgcaatatatatgactcg---------ttgttcaataagctagaacttaga |
209 |
Q |
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| T |
12224202 |
cttatagcttctcactgatgggcaaaaataggcccttggaa---ataaatgcaatatatatgtctcgttctcctcgttgttcaacaaggtaggacttaga |
12224298 |
T |
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| Q |
210 |
atgtgtcttagagatgaagaaggaaaatttatgattgcataaactacttggttctccccattttgtgacgtcgatgcaacaagtttatatacgacacttg |
309 |
Q |
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| T |
12224299 |
atgtgtcttagagatgaagaaggaaaatttatgattgcataaactacttggttctccccattttgtgacgtcgatgcaacaagtttatatacgacacttg |
12224398 |
T |
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| Q |
310 |
attgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgttattcttttaggacatatattgatgatgtctttgagttt |
409 |
Q |
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| T |
12224399 |
attgggtgccaaaccttcagttcaataatgtagattttctgttagattctaagaaggttgttattcttttaggacatatattgatgatgtctttgagttt |
12224498 |
T |
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| Q |
410 |
agttagta |
417 |
Q |
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| T |
12224499 |
agttagta |
12224506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 23316356 - 23316277
Alignment:
| Q |
291 |
agtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt |
370 |
Q |
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| T |
23316356 |
agtttataaacggaacttgattgggtggtaaatctttagttccataatgtagattttgtgttcgactctaagaaggttgt |
23316277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 38246598 - 38246201
Alignment:
| Q |
19 |
tatatagcatgcaaagtagttgatggaagaatggagacatgctcaagttattcgctcaagcggtgcaactccctctacttctgatccacatggaccatct |
118 |
Q |
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|||| ||| |||||||||||||||||| |||||||||||||| ||||| ||||| | | | ||| ||||||||||| ||||||||||||||| || || |
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| T |
38246598 |
tatagagcgtgcaaagtagttgatggatgaatggagacatgcacaagtcattcgtttaggtagtgtaactccctctagttctgatccacatgggccgact |
38246499 |
T |
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| Q |
119 |
cttatagcttctcaccgatgggcaaaaatgggcccttggaaggtataaatgcaatatatatgactcgttgttc---------aataagctagaacttaga |
209 |
Q |
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| T |
38246498 |
cttatagcttggtaacaatgggtaaaaccggcccctag-aaggtataaatgaaaaatagatgcctcgttctcctcgtcgcttaataaggtaggacttgga |
38246400 |
T |
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| Q |
210 |
atgtgtcttagagatgaagaaggaaaatttatgattgcataaactacttggttctccccattttgtgacgtcgatgc---------aacaagtttatata |
300 |
Q |
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|||| ||||||| ||||| || || |||||| ||||| ||| ||| ||||||||||| ||||||||||| |||| || ||||||| || |
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| T |
38246399 |
atgt--cttagaggcgaagagggtaattttatgcttgcaaaaagtacctggttctccccgctttgtgacgtcaatgcgggtgaagcaatgagtttatgta |
38246302 |
T |
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| Q |
301 |
cgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgtt-attcttttaggacatatattgatgatgt |
399 |
Q |
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| T |
38246301 |
cgacacttgattgggtggcaaaccttcagtttgataatgtagactttgtgttagattctaagaaggttgttgattcctttagaacatgtataaatgatgt |
38246202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 414
Target Start/End: Original strand, 46210682 - 46210779
Alignment:
| Q |
318 |
gcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt-tattcttttaggacatatattgatgatgtctttgagtttagtta |
414 |
Q |
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||||||||||| ||| ||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||| | |||||||| |||| |
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| T |
46210682 |
gcaaaccttcatttcgataatgttgattttgttttagattctaagaaggttgtcgattattttaggacatatatagatgataacattgagtttggtta |
46210779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 409
Target Start/End: Complemental strand, 9170325 - 9170215
Alignment:
| Q |
296 |
atatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgttattcttttaggacatatattgatg |
395 |
Q |
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||||| |||| |||||||||||||||| ||| ||| |||||||||||||| ||||||||| ||||| |||| | |||||||| |||| ||| ||| |
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| T |
9170325 |
atataagacatttgattgggtggcaaagcttg-gtttgataatgtagattttttgttagattataagattgttg--actcttttagaacatgtatagata |
9170229 |
T |
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| Q |
396 |
atgtctttgagttt |
409 |
Q |
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| T |
9170228 |
atgtcattgagttt |
9170215 |
T |
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