View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-26 (Length: 880)
Name: NF0999-INSERTION-26
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-26 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 8 - 880
Target Start/End: Original strand, 24399099 - 24399955
Alignment:
| Q |
8 |
cagaaattgttcatgagcctttgggtctcgtcctcattatttcatcttggaatttgcccttcggtgagttagttatatactacaatacttcttgctttga |
107 |
Q |
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| T |
24399099 |
cagaaattgttcatgagcctttgggtctcgtcctcattatttcatcttggaatttgccctttggtgagttagttatatactacaatacttcttgctttga |
24399198 |
T |
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| Q |
108 |
accaaaatctcagtcattcaattactagataaagttgaaacaacgacaaaaatttagagacggaaaattggaaatctgattctaattccgtagttaagtg |
207 |
Q |
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| T |
24399199 |
accaaaatcacagtcattcaattactagataaagttgaaacaacgacaaaaatttagagacggaaaattggaaatctgattctaatttcgtagttaagtg |
24399298 |
T |
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| Q |
208 |
ttagagatgcaaaatttaccgaccaactttaannnnnnnngcgtataannnnnnncgttattttgttagagtcttcatagatttgagctcgtaatataat |
307 |
Q |
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| T |
24399299 |
ttagagatgcgaaatttaccgaccaacttta----------------atttttttcgttattttgttagagtcttcatagatttgagctcgtaacataat |
24399382 |
T |
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| Q |
308 |
attttgtaacctatnnnnnnncacaggagtgtctttggagccactgataggagctatagctgctggaaatgcagcagtgttaaaaccttcagagttgtct |
407 |
Q |
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| T |
24399383 |
attttgtaacctataaaaaaacacaggagtgtctttggagccactgataggagctatagctgctggaaatgcagcagtgttaaaaccttcagagttgtct |
24399482 |
T |
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| Q |
408 |
cctgcatgttcttctctacttgcttctggcattgccacttacttggacaataaagccattaaggttatccaagggggaccacaggaatccgaccaattat |
507 |
Q |
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| T |
24399483 |
cctgcatgttcttctctacttgcttctggcattgccacttacttggacaataaagccattaaggttatccaagggggaccacaggaatccgaccaattat |
24399582 |
T |
|
| Q |
508 |
tacggcaaaaatgggacaaaatcttctttacaggtcaacattaccgaaatatttttcatcgcgaattttagattttgagcaggttttaaattgcagtcac |
607 |
Q |
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| T |
24399583 |
tacgtcaaaaatgggacaaaatcttctttacaggtcaacattaccgaaatatttttcatcgcgacttttagattttgagcaggttttaaattgcagtcac |
24399682 |
T |
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| Q |
608 |
gataacagtgacattcacattttaatgtggtctcagttgcaacacgttttagttttggcnnnnnnnnnnnnttattatgcagcagtgaaaattatggtcg |
707 |
Q |
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| T |
24399683 |
gataacagtgacattcacgttttaatgtggcctcagttgcaacatgttttagttttggcaaaaataaaaaattattatgtagcagtgaaaattatggtcg |
24399782 |
T |
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| Q |
708 |
cggacctttatttaaaacctagttatgagtctcttgacacaattttgatgaannnnnnnncttattgtaaaaactaatatcaggtagtgcacgagtgggg |
807 |
Q |
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| T |
24399783 |
cggacctttatttaaaacctagttatgagtctcttgacacaattttgatgaattttttttcttattgtaaaaactaatatcaggtagtgcacgagtgggg |
24399882 |
T |
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| Q |
808 |
agcattgtgatgtcagcagctgcgaagcacctgacccctgtaacactggagttgggtggaaaatgccctgctg |
880 |
Q |
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| T |
24399883 |
agcattgtgatgtcagcagctgcgaagcacctgacccctgtaacactggagttgggtggaaaatgccctgctg |
24399955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 41843117 - 41843191
Alignment:
| Q |
330 |
acaggagtgtctttggagccactgataggagctatagctgctggaaatgcagcagtgttaaaaccttcagagttg |
404 |
Q |
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|||||| |||| ||||||||| | || ||||| |||||||||||||||| ||||| ||||||||||||||||| |
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| T |
41843117 |
acaggactgtccttggagccattaattggagccatagctgctggaaatgttgcagtcctaaaaccttcagagttg |
41843191 |
T |
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