View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-28 (Length: 231)
Name: NF0999-INSERTION-28
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-28 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 41360306 - 41360398
Alignment:
| Q |
8 |
attatgaagagagagaagagtaattgaaaagtggcagagaactctcttctcgtcatctatataatatgatgaaatgctgattgtgaaccgaagtgtg |
104 |
Q |
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| T |
41360306 |
attatgaagagagagaagagaaattgaaaagtggcagagaactctcttctcttcatctat----gatgatgatatgctgattgtgaactgaagtgtg |
41360398 |
T |
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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 41360472 - 41360529
Alignment:
| Q |
169 |
gtcgaagagttcgtttcaaaacgacgtgccatggagagcttcatcttcttcaacaaag |
226 |
Q |
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| T |
41360472 |
gtcgaagagttcgtttcaaaacgacgtgccatggagagcttcatcttcttcaacaaag |
41360529 |
T |
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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 41531367 - 41531406
Alignment:
| Q |
29 |
aattgaaaagtggcagagaactctcttctcgtcatctata |
68 |
Q |
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| T |
41531367 |
aattgaaaagtggcagagaattctcttctcgtcatctata |
41531406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 43454 - 43510
Alignment:
| Q |
169 |
gtcgaagagttcgtttcaaaacgacgtgccatggagagcttcatcttcttcaacaaa |
225 |
Q |
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| T |
43454 |
gtcgaagagctcgtttcaaaacgacgtgccatggagagcttcatcttcttcagcaaa |
43510 |
T |
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