View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-29 (Length: 422)
Name: NF0999-INSERTION-29
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-29 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 28 - 418
Target Start/End: Complemental strand, 14758281 - 14757891
Alignment:
| Q |
28 |
tttatcaccatgttttgatttagcataaccgaatactgctggcatcagtaaccatacagcttcagttatttccttccttagatcannnnnnncatctaga |
127 |
Q |
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| T |
14758281 |
tttatcaccatgttttgacctagcataaccgaatactagtggcatcattgtccataaagcttcagttatttccttccttagatcatttttttcatctaga |
14758182 |
T |
|
| Q |
128 |
ccatacaatttatatagctccgaataagctggtggacactctcttactaatccaacaccctgtaaaatcaactcaatcttcttttgaaagctgttattaa |
227 |
Q |
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| T |
14758181 |
ccatacaatttatacagctccgaataagcaggaggacactttcttactaaatcaacaccttctagaatcaactcaatcctctctttatagaaataattaa |
14758082 |
T |
|
| Q |
228 |
cttcctgacttgttgcaagattcccccaatccctaaatgtagcatcacatatcataaatctttgtaccggtggcggggacgagtcgatcctcagagctag |
327 |
Q |
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| T |
14758081 |
cttccttacctgttgcaagcttcccccaatcactaaatgtagcctcaaataccaaaaatctttgcaccggcggcggggacgcatcgatggtcagagctag |
14757982 |
T |
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| Q |
328 |
ctttgatgccaacatattagccctcctaagcacctgtgcaagccagtatgtttgtgctagtccaaatggatgtgcagcaatccaacaaagt |
418 |
Q |
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| T |
14757981 |
ctttgatgccaacatattagtcctcccaagcacctgtgcaagccagtatgtttgtgctagtccaaatggatgtgcagcaattctacaaagt |
14757891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 137 - 418
Target Start/End: Complemental strand, 3614349 - 3614068
Alignment:
| Q |
137 |
ttatatagctccgaataagctggtggacactctcttactaatccaacaccctgtaaaatcaactcaatcttcttttgaaagctgttattaacttcctgac |
236 |
Q |
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||||| ||||| |||||||| || ||||||| |||||||||| ||||||||| || ||||||||||||| |||||||| || | ||||||||||||||| |
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| T |
3614349 |
ttatacagctctgaataagcaggaggacactttcttactaattcaacaccctctataatcaactcaatcctcttttgatagatactattaacttcctgac |
3614250 |
T |
|
| Q |
237 |
ttgttgcaagattcccccaatccctaaatgtagcatcacatatcataaatctttgtaccggtggcggggacgagtcgatcctcagagctagctttgatgc |
336 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | || | ||||||||||||||||||||| |
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| T |
3614249 |
ctgttgcaagcttcccccaatcactaaatgtagcatcacatatcataaatctttgcaccggtggcggcgatgcatcaaccctcagagctagctttgatgc |
3614150 |
T |
|
| Q |
337 |
caacatattagccctcctaagcacctgtgcaagccagtatgtttgtgctagtccaaatggatgtgcagcaatccaacaaagt |
418 |
Q |
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| T |
3614149 |
caacatattagtcctcccaagcacctgtgcaagccagtatgtttgtgctaatccaaatggatgtgcaacaatcctacaaagt |
3614068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 3614435 - 3614346
Alignment:
| Q |
7 |
actcattgccatagctacacgtttatcaccatgttttgatttagcataaccgaatactgctggcatcagtaaccatacagcttcagttat |
96 |
Q |
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|||||| |||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| | || |||||||||| |||| |
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| T |
3614435 |
actcatagccatagctatacgtttatcaccatgttttgacttagcataaccgaacactgctggcatcaatgtccctacagcttcacttat |
3614346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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