View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-3 (Length: 770)
Name: NF0999-INSERTION-3
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 752; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 7 - 770
Target Start/End: Original strand, 49113000 - 49113763
Alignment:
| Q |
7 |
agtgggttgcataatgttatttttgatcgatcatacatagaaacctatactcagatagatggtaacaaatatatactatgttttagttacctgaattcta |
106 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49113000 |
agtgggttgcataatgttctttttgatcgatcatacacagaaacctatactcagatagatggtaacaaatatatactatgttttagttacctgaattcta |
49113099 |
T |
|
| Q |
107 |
gagcttatatttttcactgaaacaacgtttgccaaattagtcaagggtccgttggttagtacagtaatattggaccctggtttcattgtttgcaatacag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49113100 |
gagcttatatttttcactgaaacaacgtttgccaaattagtcaagggtccgttggttagtacagtaatattggaccctggtttcattgtttgcaatacag |
49113199 |
T |
|
| Q |
207 |
actcccaaacttccatagctagtggttgtctaagttctgggtgatccgtatcccgtggggctccaaacttcacagagttttctcctgtatacctgaaata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49113200 |
actcccaaacttccatagctagtggttgtctaagttctgggtgatccgtatcccgtggggctccaaacttcacagagttttctcctgtatacctgaaata |
49113299 |
T |
|
| Q |
307 |
atttttagtgtattagtcttttgctgttaacaaacccatggagttttttcaagaaaacgtggtgtttgaatcctctggagtgactgcattgtgcatcatg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49113300 |
atttttagtgtattagtcttttgctgttaacaaacccatggagttttttcaagcaaacgtggtgtttgaatcctctggagtgactgcattgtgcatcatg |
49113399 |
T |
|
| Q |
407 |
atgcagagccaatgaattgaagatagagaatacaattactgatctctgaggtcaatgcgccatgcagcagcgattgtaagagattcaatttcaaagttac |
506 |
Q |
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| T |
49113400 |
atgcagagccaatgaattgaagatagagaatacaattactgatctctgaggtcaatgcgccatgcagcagcgattgtaagagattcaatttcaaagttac |
49113499 |
T |
|
| Q |
507 |
agataaagactctgcggccgttgcacagtgcagcagccgtgaggatgtttaggtctagaaatagaaacttatgatacatcgtaatgctagatgaaaaaca |
606 |
Q |
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| T |
49113500 |
agataaagactctgcggccgttgcacagtgcagcagccgtgaggatgtttaggtctagaaatagaaacttatgatacatcgtaatgctagatgaaaaaca |
49113599 |
T |
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| Q |
607 |
atactaaacaatagcatggaagttactactaaaaagcaccttcttgggcttcgtggcagataacgagcaagaccataaagagtatcggaatctatgtaac |
706 |
Q |
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| T |
49113600 |
atactaaacaatagcatggaagttactactaaaaagcaccttcttgggcttcgtggcagataacgagcaagaccataaagagtatcggaatctatgtaac |
49113699 |
T |
|
| Q |
707 |
ctccattcccatgaggaatggctttaacatacttgcagcctccaacggctccgaatattggatc |
770 |
Q |
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| T |
49113700 |
ctccattcccatgaggaatggctttaacatacttgcagcctccaacggctccgaatattggatc |
49113763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 93 - 345
Target Start/End: Original strand, 49101131 - 49101383
Alignment:
| Q |
93 |
ttacctgaattctagagcttatatttttcactgaaacaacgtttgccaaattagtcaagggtccgttggttagtacagtaatattggaccctggtttcat |
192 |
Q |
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|||||| |||||| |||||||| || ||| ||||||||| |||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
49101131 |
ttaccttaattcttgagcttatgttagtcattgaaacaacctttgccaaattagttaagggtccattggttaatactgtaatattggaccctggtttcat |
49101230 |
T |
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| Q |
193 |
tgtttgcaatacagactcccaaacttccatagctagtggttgtctaagttctgggtgatccgtatcccgtggggctccaaacttcacagagttttctcct |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||||||| |||||||| |
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| T |
49101231 |
tgtttgcaatacagactcccaaacttccatagctagtggttgtctaagttcaagatgatctgtatcccgtggggcaccaaacttcacagatttttctccg |
49101330 |
T |
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| Q |
293 |
gtatacctgaaataatttttagtgtattagtcttttgctgttaacaaacccat |
345 |
Q |
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| T |
49101331 |
gtatacctgaaataattcatagtgtatcagtcctttgctggtaacaaatccat |
49101383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 633 - 770
Target Start/End: Original strand, 49101532 - 49101669
Alignment:
| Q |
633 |
tactaaaaagcaccttcttgggcttcgtggcagataacgagcaagaccataaagagtatcggaatctatgtaacctccattcccatgaggaatggcttta |
732 |
Q |
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|||||||| ||||||||| ||||| || || |||| ||||| |||||||||||||| || ||||| | ||| || ||| |||||||||||||||||||| |
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| T |
49101532 |
tactaaaatgcaccttctcgggctgcgaggtagatgtcgagccagaccataaagagtgtcagaatcgaggtaccccccactcccatgaggaatggcttta |
49101631 |
T |
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| Q |
733 |
acatacttgcagcctccaacggctccgaatattggatc |
770 |
Q |
| |
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| T |
49101632 |
acatacttgcaatctccaacgactgggagtattggatc |
49101669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 8e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 93 - 303
Target Start/End: Complemental strand, 6967440 - 6967230
Alignment:
| Q |
93 |
ttacctgaattctagagcttatatttttcactgaaacaacgtttgccaaattagtcaagggtccgttggttagtacagtaatattggaccctggtttcat |
192 |
Q |
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||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||| || ||||||||||||| |
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| T |
6967440 |
ttacctgaattctggagcttatgtttttaactgatacaacctttgccaaattagtcaagggtccattggttaatactgtaatcttagaccctggtttcag |
6967341 |
T |
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| Q |
193 |
tgtttgcaatacagactcccaaacttccatagctagtggttgtctaagttctgggtgatccgtatcccgtggggctccaaacttcacagagttttctcct |
292 |
Q |
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||||||||||| ||||||||||| ||||||| || ||||||| || ||||| |||||||| ||||| | | |||||||||||||||| ||||||| || |
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| T |
6967340 |
tgtttgcaataaagactcccaaatttccataactcgtggttgcctgagttccgggtgatcagtatctctaagagctccaaacttcacagtgttttctgct |
6967241 |
T |
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| Q |
293 |
gtatacctgaa |
303 |
Q |
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|| |||||||| |
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| T |
6967240 |
gtgtacctgaa |
6967230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 95 - 303
Target Start/End: Complemental strand, 6960020 - 6959812
Alignment:
| Q |
95 |
acctgaattctagagcttatatttttcactgaaacaacgtttgccaaattagtcaagggtccgttggttagtacagtaatattggaccctggtttcattg |
194 |
Q |
| |
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||||||||| | |||||||| ||||| | ||| ||||| || |||||||||||||| ||||| ||||||| ||| |||| || ||||||||||||| || |
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| T |
6960020 |
acctgaattatggagcttatgtttttaattgatacaaccttcgccaaattagtcaacggtccattggttaatactgtaaccttagaccctggtttcaatg |
6959921 |
T |
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| Q |
195 |
tttgcaatacagactcccaaacttccatagctagtggttgtctaagttctgggtgatccgtatcccgtggggctccaaacttcacagagttttctcctgt |
294 |
Q |
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| T |
6959920 |
tttgcaatatagattcccaaatttccatagcttgcggttgtctgagttcagggtgatcagtgtctctaggtgctccaaactttttagagttttctgctgt |
6959821 |
T |
|
| Q |
295 |
atacctgaa |
303 |
Q |
| |
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|||||||| |
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| T |
6959820 |
gtacctgaa |
6959812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 181285 - 181404
Alignment:
| Q |
107 |
gagcttatatttttcactgaaacaacgtttgccaaattagtcaagggtccgttggttagtacagtaatattggaccctggtttcattgtttgcaatacag |
206 |
Q |
| |
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|||||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||| || ||| |||||||| ||||||||||| | |
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| T |
181285 |
gagcttatgtttttaactgatacaacctttgccaaattagtcaagggtccattggttaatactgtaatcttagactctggtttcgatgtttgcaataaaa |
181384 |
T |
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| Q |
207 |
actcccaaacttccatagct |
226 |
Q |
| |
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| ||||||| |||||||||| |
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| T |
181385 |
attcccaaatttccatagct |
181404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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