View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-30 (Length: 594)
Name: NF0999-INSERTION-30
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Complemental strand, 3447607 - 3447020
Alignment:
| Q |
8 |
taaaatgtaaaatctaatacataggctatcctcaaaattgatttcaaccgga-caggtagcttgatgctttgatataacaactgaattttgattgttttg |
106 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3447607 |
taaaatgtaaaatctaatacttaggctatcctcaaaattgatttcaaccgaaacaggtagcttgatgctttgatataacaactgaattttgattgttttg |
3447508 |
T |
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| Q |
107 |
agtgcactttatgtcctaaactgttcctgcatttgaatgttttgattgttaagtcggccttttctgaatattggccttgtcttggatttggttgctttga |
206 |
Q |
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| T |
3447507 |
agtgcactttatgtcctaaactgttcctgcatttgaatgttttgattgttaagtcggccttttctgaatattggccttgtcttggatttggttgctttga |
3447408 |
T |
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| Q |
207 |
attgctgagttggtccttttgtgtgtgaaataaagaacaaataggttcctttatgtgaattttgtaaattgaacttgatgattgacaattgttgttctat |
306 |
Q |
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| T |
3447407 |
attgctgagttggtccttttatgtgtgaaataaagaacaaaaaggttcctttatgtgaattttgtaaattgaacttgatgattgacaattgttgttctat |
3447308 |
T |
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| Q |
307 |
tgaccctttccaatacatacataagtttcacagtaaactaatagaagatggaggacaaatgtttggcaattgtatttgtatgaatataaaatgttttata |
406 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3447307 |
tgaccctttccaataaatacataagtttcacagtaaactaatagaagatggaggacaaatgtttgacaattgtatttgtatgaatataaaatgttttata |
3447208 |
T |
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| Q |
407 |
atgaatataacagctgaattttgattgtttttagtgaacctgccattctaaattgtttcctgcatttgaacgttttcattgctaaacagaaaccgcagtg |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
3447207 |
atgaatataacagctgaattttgattgtttttagtgaacctgccattctaaattgtttcctgcatttgaacgttttcattgttaaacagaaaacgcagtg |
3447108 |
T |
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| Q |
507 |
caaactcataagcagcaaatacagcaccattcacaacaaatgctctggcaaccgcagttcctaaaccgcgccacagcacagggtatcc |
594 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3447107 |
caaactcataagcagcaaatacagcaccattcacaacaaatgctctggcaaccgcagttcctaaaccacgccacagcacagggtatcc |
3447020 |
T |
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