View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0999-INSERTION-31 (Length: 748)

Name: NF0999-INSERTION-31
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0999-INSERTION-31
NF0999-INSERTION-31
[»] chr3 (10 HSPs)
chr3 (183-714)||(42443312-42443836)
chr3 (8-112)||(42443137-42443241)
chr3 (435-492)||(34979169-34979226)
chr3 (431-484)||(32536466-32536519)
chr3 (431-488)||(46008577-46008634)
chr3 (431-490)||(22235478-22235537)
chr3 (431-488)||(23195719-23195776)
chr3 (429-484)||(47944333-47944388)
chr3 (428-487)||(47944547-47944606)
chr3 (431-488)||(43838820-43838877)
[»] scaffold0687 (1 HSPs)
scaffold0687 (431-490)||(1629-1688)
[»] chr8 (7 HSPs)
chr8 (431-490)||(7603945-7604004)
chr8 (431-483)||(7681012-7681064)
chr8 (431-486)||(6915514-6915569)
chr8 (431-490)||(10028400-10028459)
chr8 (431-486)||(29908950-29909005)
chr8 (431-484)||(12530788-12530841)
chr8 (431-488)||(41616693-41616750)
[»] chr6 (5 HSPs)
chr6 (431-488)||(17848825-17848882)
chr6 (431-487)||(31803959-31804015)
chr6 (431-488)||(25085082-25085139)
chr6 (429-487)||(33187072-33187130)
chr6 (431-484)||(33551086-33551139)
[»] chr1 (5 HSPs)
chr1 (431-488)||(41730141-41730198)
chr1 (434-490)||(32743325-32743381)
chr1 (649-695)||(12928513-12928559)
chr1 (441-494)||(29853073-29853126)
chr1 (429-458)||(40192866-40192895)
[»] chr5 (6 HSPs)
chr5 (431-487)||(23159081-23159137)
chr5 (433-484)||(33757597-33757648)
chr5 (431-488)||(6217432-6217489)
chr5 (439-490)||(28503835-28503886)
chr5 (431-488)||(27554313-27554370)
chr5 (431-484)||(35079057-35079110)
[»] chr2 (2 HSPs)
chr2 (457-493)||(33261169-33261205)
chr2 (427-486)||(13478769-13478828)
[»] chr4 (4 HSPs)
chr4 (433-484)||(26404625-26404676)
chr4 (431-490)||(42375228-42375287)
chr4 (435-491)||(23716599-23716655)
chr4 (431-488)||(4161880-4161937)
[»] chr7 (5 HSPs)
chr7 (431-488)||(10228752-10228809)
chr7 (431-486)||(23441505-23441560)
chr7 (431-490)||(30793134-30793193)
chr7 (431-486)||(39608367-39608422)
chr7 (431-469)||(47322947-47322985)
[»] scaffold0102 (1 HSPs)
scaffold0102 (435-489)||(27099-27153)
[»] scaffold0022 (1 HSPs)
scaffold0022 (435-469)||(83073-83107)


Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 183 - 714
Target Start/End: Original strand, 42443312 - 42443836
Alignment:
Q  183 tgaaggaagggcacgagccttaaaatctcaactgccttattcttcttcacttgacattcttcgttcctcctactagcataatatatggtgtgcgccaaaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42443312 tgaaggaagggcacgagccttaaaatctcaactgccttattcttcttcacttgacattcttcgttcctcctactagcataatatatggtatgcgccaaaa 42443411  T
Q  283 ttgacgagaaggtacctccacgtccccaatttgtgttgtgttagccaccaagagcatgtccaatgcatctacattatgttatggtagatcaattcttgtc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  42443412 ttgacgagaaggtacctccacgtccccaatttgtgttgtgttagccaccaagagcatgtccaatgcatctacattatgttatggtagatcaactcttgtg 42443511  T
Q  383 gactcatatgtgtttagtttccgaaattataattaccacaatagtttgaatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaa 482  Q
            |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  42443512 t-------tgtgtttagtttccgaaattataactaccacgatagtttgaatgtatcgaaattttaaaataatttttaattattcatttcgttagttaaaa 42443604  T
Q  483 tagtctctcataaaagtagaataggctaagtcaagctacattctaatagattcaagactcgcctgtctaaaattttaagacttaagtctagtttgcggtt 582  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42443605 tagtctctcataaaagtagaataggttaagtcaagctacattctaataaactcaagactggcctgtctaaaattttaagacttaagtctagtttgcggtt 42443704  T
Q  583 tatcatagagtttttaaagtgaagattacaaactcagttatatcattactcacttgattgaaatatacaaccttcttagcatccaatttaaaatccacat 682  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  42443705 tatcatagagtttttaaagtgaagattacaaactcaattatatcattactcactttattgaaatatacaaccttcttagcatccaattcaaaatccacat 42443804  T
Q  683 ttgttacttgtagagcatgcattcatcggtag 714  Q
    ||||||||||||||||||||||||||||||||    
T  42443805 ttgttacttgtagagcatgcattcatcggtag 42443836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 42443137 - 42443241
Alignment:
Q  8 agatggacatggcgtagagtgggtatggggaatcgtatgttacggagttgttatcggatcggagatgggattcttgtgttgaattatccatttttggtgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42443137 agatggacatggcgtagagtgggtatggggaatcgtatgttacggagttgttatcggatcggagatgggattcttgtgttgaattatccatttttggtgg 42443236  T
Q  108 atggt 112  Q
    |||||    
T  42443237 atggt 42443241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 435 - 492
Target Start/End: Complemental strand, 34979226 - 34979169
Alignment:
Q  435 tatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtctctca 492  Q
    |||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  34979226 tatcgaaattttaaaatagtttttaattgtgcattttgttagtcaaaatagtctctca 34979169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 484
Target Start/End: Original strand, 32536466 - 32536519
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaata 484  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||    
T  32536466 aatgtattgaaattctaaaataatttttgattgtgcatttcgttagttaaaata 32536519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 46008577 - 46008634
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtct 488  Q
    |||||||||| |||| |||||||| ||||||| ||||||| |||||||||||||||||    
T  46008577 aatgtatcgagatttcaaaataatctttaattatgcattttgttagttaaaatagtct 46008634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 431 - 490
Target Start/End: Complemental strand, 22235537 - 22235478
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtctct 490  Q
    ||||||||||||||| |||||||||||| |||||||| || |||||| |||||| |||||    
T  22235537 aatgtatcgaaatttcaaaataatttttgattgtgcaatttgttagtcaaaataatctct 22235478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 23195776 - 23195719
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtct 488  Q
    |||||||  ||||||||||||||||| | |||||||||||| |||||| |||||||||    
T  23195776 aatgtattaaaattttaaaataatttctgattgtgcatttcattagttcaaatagtct 23195719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 484
Target Start/End: Original strand, 47944333 - 47944388
Alignment:
Q  429 tgaatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaata 484  Q
    |||||||||||||||||||||||| | ||| |||||||| || |||||| ||||||    
T  47944333 tgaatgtatcgaaattttaaaatagtctttgattgtgcactttgttagtcaaaata 47944388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 428 - 487
Target Start/End: Complemental strand, 47944606 - 47944547
Alignment:
Q  428 ttgaatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtc 487  Q
    |||||||||| |||||||||||||| | ||| |||||||| ||||||| | |||||||||    
T  47944606 ttgaatgtattgaaattttaaaatagtctttgattgtgcacttcgttaatcaaaatagtc 47944547  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 43838877 - 43838820
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtct 488  Q
    |||||||| ||||||||||||| |  || ||||||||||| |||||| ||||||||||    
T  43838877 aatgtatcaaaattttaaaatagtcattgattgtgcattttgttagtcaaaatagtct 43838820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 431 - 490
Target Start/End: Original strand, 1629 - 1688
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtctct 490  Q
    |||||||| ||||||||||||||||||| |||||||| |||||| || ||||||||||||    
T  1629 aatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctct 1688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 431 - 490
Target Start/End: Original strand, 7603945 - 7604004
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtctct 490  Q
    |||||||| ||||||||||||||||||| |||||||| |||||| || ||||||||||||    
T  7603945 aatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctct 7604004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 7681064 - 7681012
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaat 483  Q
    |||||||| ||||||||||||| | ||| |||||||||||||||||| |||||    
T  7681064 aatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtcaaaat 7681012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 486
Target Start/End: Complemental strand, 6915569 - 6915514
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagt 486  Q
    |||||||| ||||||||||||||||||| ||||||||||  |||| | ||||||||    
T  6915569 aatgtatcaaaattttaaaataatttttgattgtgcattatgttaatcaaaatagt 6915514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 490
Target Start/End: Original strand, 10028400 - 10028459
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtctct 490  Q
    |||| |||||| || ||||||| | | |||||||||||||||||||| ||||||||||||    
T  10028400 aatgaatcgaatttctaaaatagtctctaattgtgcatttcgttagtcaaaatagtctct 10028459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 486
Target Start/End: Original strand, 29908950 - 29909005
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagt 486  Q
    ||||||| |||||||||||||| || || ||||||||||| |||||| ||||||||    
T  29908950 aatgtattgaaattttaaaatagttattgattgtgcatttggttagtcaaaatagt 29909005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 484
Target Start/End: Complemental strand, 12530841 - 12530788
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaata 484  Q
    |||||||||||||||||||||||| | | ||||||||  |||||||| ||||||    
T  12530841 aatgtatcgaaattttaaaataatatctgattgtgcaactcgttagtcaaaata 12530788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 41616693 - 41616750
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtct 488  Q
    ||||||| |||||||||||||||| |||  || |||| ||||||||| ||||||||||    
T  41616693 aatgtattgaaattttaaaataatcttttgttatgcacttcgttagtcaaaatagtct 41616750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 17848882 - 17848825
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtct 488  Q
    |||||||| |||||||||||||||||   |||||||||||||||||| ||||||||||    
T  17848882 aatgtatcaaaattttaaaataatttcagattgtgcatttcgttagtcaaaatagtct 17848825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 487
Target Start/End: Original strand, 31803959 - 31804015
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtc 487  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||||| |||| ||||    
T  31803959 aatgtatcaaaattttaaaataatttttgattgttcatttcgttagtcaaaacagtc 31804015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 25085139 - 25085082
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtct 488  Q
    |||||||| ||||||||||||| ||||| |||||||| || |||||| ||||||||||    
T  25085139 aatgtatcaaaattttaaaatactttttgattgtgcactttgttagtcaaaatagtct 25085082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 429 - 487
Target Start/End: Original strand, 33187072 - 33187130
Alignment:
Q  429 tgaatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtc 487  Q
    |||||||||||||||||||||||| |||||   |||||| |||| |||| |||||||||    
T  33187072 tgaatgtatcgaaattttaaaatagtttttggatgtgcagttcgatagtcaaaatagtc 33187130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 484
Target Start/End: Complemental strand, 33551139 - 33551086
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaata 484  Q
    |||||||| ||||||||||||| | | | |||||||||||||||||| ||||||    
T  33551139 aatgtatcaaaattttaaaatattatctgattgtgcatttcgttagtcaaaata 33551086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 41730198 - 41730141
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtct 488  Q
    ||||||| |||||||||||||| | ||||||| ||||||||||||||||| |||||||    
T  41730198 aatgtattgaaattttaaaatagtgtttaattatgcatttcgttagttaagatagtct 41730141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 490
Target Start/End: Complemental strand, 32743381 - 32743325
Alignment:
Q  434 gtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtctct 490  Q
    ||||| ||||||||||||||| ||| ||||| |||||||||||| |||||| |||||    
T  32743381 gtatcaaaattttaaaataatctttgattgtacatttcgttagtcaaaataatctct 32743325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 695
Target Start/End: Complemental strand, 12928559 - 12928513
Alignment:
Q  649 acaaccttcttagcatccaatttaaaatccacatttgttacttgtag 695  Q
    ||||| ||||| |||||||||| ||||||||||||||||| ||||||    
T  12928559 acaactttcttggcatccaattcaaaatccacatttgttagttgtag 12928513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 494
Target Start/End: Complemental strand, 29853126 - 29853073
Alignment:
Q  441 aattttaaaataatttttaattgtgcatttcgttagttaaaatagtctctcata 494  Q
    |||||||||| ||| | ||||||||||||  |||||| ||||||||||||||||    
T  29853126 aattttaaaacaatctctaattgtgcattatgttagtgaaaatagtctctcata 29853073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 458
Target Start/End: Original strand, 40192866 - 40192895
Alignment:
Q  429 tgaatgtatcgaaattttaaaataattttt 458  Q
    ||||||||||||||||||||||||||||||    
T  40192866 tgaatgtatcgaaattttaaaataattttt 40192895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 487
Target Start/End: Original strand, 23159081 - 23159137
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtc 487  Q
    |||||||| ||||||||||||| | ||| |||||||||||||||||| |||||||||    
T  23159081 aatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtaaaaatagtc 23159137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 33757648 - 33757597
Alignment:
Q  433 tgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaata 484  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||| ||||||    
T  33757648 tgtatcaaaattttaaaataattttttattgtgtatttcgttagtcaaaata 33757597  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 6217432 - 6217489
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtct 488  Q
    |||||||| ||||||||||||||| | | ||||||||||| | |||||||||||||||    
T  6217432 aatgtatcaaaattttaaaataatatctgattgtgcattttgatagttaaaatagtct 6217489  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 490
Target Start/End: Original strand, 28503835 - 28503886
Alignment:
Q  439 gaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtctct 490  Q
    |||||||||||||| | ||||||||||||||  |||||| ||||||||||||    
T  28503835 gaaattttaaaatagtctttaattgtgcattctgttagtcaaaatagtctct 28503886  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 27554370 - 27554313
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtct 488  Q
    |||||||| ||||| |||||||||  ||||||||||| |  |||||||||||||||||    
T  27554370 aatgtatcaaaattctaaaataatccttaattgtgcactctgttagttaaaatagtct 27554313  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 484
Target Start/End: Complemental strand, 35079110 - 35079057
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaata 484  Q
    ||||||| || |||| ||||||||| || |||||||| ||||||||||||||||    
T  35079110 aatgtattgagatttcaaaataattgtttattgtgcaattcgttagttaaaata 35079057  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 33261205 - 33261169
Alignment:
Q  457 ttaattgtgcatttcgttagttaaaatagtctctcat 493  Q
    |||||||||||||||||||||||||||||||||||||    
T  33261205 ttaattgtgcatttcgttagttaaaatagtctctcat 33261169  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 486
Target Start/End: Complemental strand, 13478828 - 13478769
Alignment:
Q  427 tttgaatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagt 486  Q
    ||||||| |||| ||||||||||||| ||||| |||||||||||  ||||| ||||||||    
T  13478828 tttgaatatatcaaaattttaaaatagtttttgattgtgcattttattagtcaaaatagt 13478769  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 26404676 - 26404625
Alignment:
Q  433 tgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaata 484  Q
    |||||| |||||||||||||||||||| |||| |||||||||||| ||||||    
T  26404676 tgtatcaaaattttaaaataatttttagttgtacatttcgttagtcaaaata 26404625  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 431 - 490
Target Start/End: Complemental strand, 42375287 - 42375228
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtctct 490  Q
    ||||||||||||||| ||| || ||||| ||| |||| ||||||||||||||||||||||    
T  42375287 aatgtatcgaaatttcaaagtagtttttgattctgcacttcgttagttaaaatagtctct 42375228  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 491
Target Start/End: Original strand, 23716599 - 23716655
Alignment:
Q  435 tatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtctctc 491  Q
    |||||||||||||||||| ||||| |||| ||| |  ||||||||||||||||||||    
T  23716599 tatcgaaattttaaaatagtttttgattgcgcactctgttagttaaaatagtctctc 23716655  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 4161937 - 4161880
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtct 488  Q
    ||||||||  ||||||| |||| || |||||||||||||| |||||| ||||||||||    
T  4161937 aatgtatcacaattttacaatagttattaattgtgcattttgttagtcaaaatagtct 4161880  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 10228752 - 10228809
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtct 488  Q
    ||||||||||||||| |||||| | ||| |||||||| ||||||||| ||||||||||    
T  10228752 aatgtatcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaaatagtct 10228809  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 486
Target Start/End: Original strand, 23441505 - 23441560
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagt 486  Q
    |||||||||||||||||||||| || || |||||||| ||||||| | ||||||||    
T  23441505 aatgtatcgaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagt 23441560  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 490
Target Start/End: Complemental strand, 30793193 - 30793134
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtctct 490  Q
    ||||||| |||||||||||||| |||||||||| | | |||  |||||||||||||||||    
T  30793193 aatgtattgaaattttaaaatagtttttaattgagtacttcagtagttaaaatagtctct 30793134  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 486
Target Start/End: Original strand, 39608367 - 39608422
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagt 486  Q
    ||||||||||||||| ||||||||  || || ||||| ||||||||||||||||||    
T  39608367 aatgtatcgaaatttcaaaataatcattgatcgtgcacttcgttagttaaaatagt 39608422  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 47322947 - 47322985
Alignment:
Q  431 aatgtatcgaaattttaaaataatttttaattgtgcatt 469  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  47322947 aatgtatcaaaattttaaaataatatttaattgtgcatt 47322985  T

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Target: scaffold0102 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 489
Target Start/End: Original strand, 27099 - 27153
Alignment:
Q  435 tatcgaaattttaaaataatttttaattgtgcatttcgttagttaaaatagtctc 489  Q
    |||| ||||||||||||||| ||| |||||||| ||||||| | |||||||||||    
T  27099 tatcaaaattttaaaataatctttgattgtgcacttcgttaatcaaaatagtctc 27153  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 469
Target Start/End: Complemental strand, 83107 - 83073
Alignment:
Q  435 tatcgaaattttaaaataatttttaattgtgcatt 469  Q
    |||||||||||||||||||||||||||||| ||||    
T  83107 tatcgaaattttaaaataatttttaattgtacatt 83073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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