View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0999-INSERTION-32 (Length: 577)
Name: NF0999-INSERTION-32
Description: NF0999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0999-INSERTION-32 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 396
Target Start/End: Original strand, 5561106 - 5561491
Alignment:
| Q |
8 |
ggatgattttacagttattaaggaaggtgaagctgagattcttatgagtaagaaaaataaagtctttttcaataaagctcaggtaattataaagtttgnn |
107 |
Q |
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| T |
5561106 |
ggatgattttacagttattaaggaaggtgaagctgagattcttatgagtaagaaaaataaagtctttttcaataaggctcaggtaattaaaaagtttgtt |
5561205 |
T |
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| Q |
108 |
nnnnnnnnattccctttttcttataattggatttgaaatcagggttttgatgaaaaaccctaattgaaaattttgattttttagtgtctgatgtttggtt |
207 |
Q |
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| T |
5561206 |
ttttt---attccctttttcttataattggatttgaaatcagggttttgatgaaaaaccctaattgaaaattttgattttttagtgtctgatgtttggtt |
5561302 |
T |
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| Q |
208 |
tatggtgaaagaaatgatgggttttgtacaaaattgaaacttgagtaatgggttttgtacaaaattggaaatcatggttttgatataaaaccctaattga |
307 |
Q |
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| T |
5561303 |
tatggtgaaagaaatgatgggttttgtacaaaattgaaacttgagtaatgggttttgtacaaaattggaaatcatggttttgatgtaaaaccctaattga |
5561402 |
T |
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| Q |
308 |
attttaatgaatttgaatccaatgtttggtttatggtgtaaaatatgatgggttgtgaacaaaattgaaacttgaatatcggatgatgc |
396 |
Q |
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| T |
5561403 |
attttaatgaatttgaatccaatgtttggtttatggtgtaaaatatgatgggttgtgaacaaaattgaaacttgaatatcggatgatgc |
5561491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 458 - 577
Target Start/End: Original strand, 5561555 - 5561675
Alignment:
| Q |
458 |
agtaaaggagttttgtggttagattttagtagatacaatcatttccacttaggatatgttt-ggaatgactttgaatttgaccaaatcagggtggcaatg |
556 |
Q |
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| T |
5561555 |
agtaaaggagttttttggttagattttattagatacaatcatttccacttaggatatgttttggaatgactttgaatttgaccaaatcagggtggcaatg |
5561654 |
T |
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| Q |
557 |
tgattttgttacagctccaaa |
577 |
Q |
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| T |
5561655 |
tgattttgttacagctccaaa |
5561675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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